miRNA display CGI


Results 61 - 80 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11132 5' -63.4 NC_002794.1 + 95799 0.7 0.475053
Target:  5'- cGCGGCGgaggaaCCGGGggagcGGCGgcGGCCGGg -3'
miRNA:   3'- cCGCCGCacg---GGCCCa----CUGC--UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 95839 0.78 0.145784
Target:  5'- cGGCGGCGgcgGCCgGGGaggcggcgGGCGGGCCGu -3'
miRNA:   3'- -CCGCCGCa--CGGgCCCa-------CUGCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 98079 0.68 0.583686
Target:  5'- uGGCGGCGcUGUCCGcuuUGGCGGGuauccCCGGu -3'
miRNA:   3'- -CCGCCGC-ACGGGCcc-ACUGCUC-----GGCC- -5'
11132 5' -63.4 NC_002794.1 + 100798 0.67 0.653255
Target:  5'- cGCGGCcgcuucugcgccuacGUG-CCGGGcGGCGggGGCCGGc -3'
miRNA:   3'- cCGCCG---------------CACgGGCCCaCUGC--UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 101526 0.69 0.501386
Target:  5'- cGGCGGgGUGCCCGGcGccACGuuCCGa -3'
miRNA:   3'- -CCGCCgCACGGGCC-CacUGCucGGCc -5'
11132 5' -63.4 NC_002794.1 + 101570 0.69 0.492535
Target:  5'- cGGCGGgaGUGCcggccgccgcggCCGGGggGGCGGguGCCGGc -3'
miRNA:   3'- -CCGCCg-CACG------------GGCCCa-CUGCU--CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 101657 0.69 0.519293
Target:  5'- gGGCGGCGguuaGCCCGuccgaaacgccGGcgGAgcgcgagccCGAGCCGGc -3'
miRNA:   3'- -CCGCCGCa---CGGGC-----------CCa-CU---------GCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 102074 0.7 0.466429
Target:  5'- gGGCGaCcUGCCgCGGGccGACGAGCCGc -3'
miRNA:   3'- -CCGCcGcACGG-GCCCa-CUGCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 102155 0.72 0.340968
Target:  5'- cGGCGGCGUGCgcgCCGGGgccaucGugGcGCgCGGc -3'
miRNA:   3'- -CCGCCGCACG---GGCCCa-----CugCuCG-GCC- -5'
11132 5' -63.4 NC_002794.1 + 102649 0.68 0.547524
Target:  5'- uGGCGGCGcGCUCGGaGgagcugccgagcgugGGCGA-CCGGg -3'
miRNA:   3'- -CCGCCGCaCGGGCC-Ca--------------CUGCUcGGCC- -5'
11132 5' -63.4 NC_002794.1 + 104467 0.71 0.424586
Target:  5'- gGGCGGCGUGUgCaGGaugcgGGCGgccacggcGGCCGGg -3'
miRNA:   3'- -CCGCCGCACGgGcCCa----CUGC--------UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 105446 0.76 0.221081
Target:  5'- cGGCGGCGccgucguucUGCCCGuucuGGgacGACGAGCCGu -3'
miRNA:   3'- -CCGCCGC---------ACGGGC----CCa--CUGCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 105546 0.66 0.705506
Target:  5'- cGGCGGCG-GCUCGGGcgaacgGAUagggugcgcguaGAGCaGGa -3'
miRNA:   3'- -CCGCCGCaCGGGCCCa-----CUG------------CUCGgCC- -5'
11132 5' -63.4 NC_002794.1 + 105910 0.68 0.593043
Target:  5'- cGGCGGCG-GCgcuaccgccgCCGccgGACGGGCUGGa -3'
miRNA:   3'- -CCGCCGCaCG----------GGCccaCUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 106978 0.69 0.519293
Target:  5'- cGCGGCGgccgGCaCgGcGGUGGCGGcGCUGGc -3'
miRNA:   3'- cCGCCGCa---CG-GgC-CCACUGCU-CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 107241 0.66 0.668281
Target:  5'- gGGCGGCGUcgcggaccugGCCCGGcg---GAGCCGc -3'
miRNA:   3'- -CCGCCGCA----------CGGGCCcacugCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 107883 0.68 0.546605
Target:  5'- aGGCGGCGcgGC--GGGUG-CGGcuGCCGGg -3'
miRNA:   3'- -CCGCCGCa-CGggCCCACuGCU--CGGCC- -5'
11132 5' -63.4 NC_002794.1 + 108454 0.73 0.300641
Target:  5'- cGGCGGCG-GCCCGccgGcACGGGCCGa -3'
miRNA:   3'- -CCGCCGCaCGGGCccaC-UGCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 110430 0.68 0.583686
Target:  5'- gGGCGGCugucgucgucgGUGgCgGaGGccGGCGAGCCGGc -3'
miRNA:   3'- -CCGCCG-----------CACgGgC-CCa-CUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 111093 0.7 0.465571
Target:  5'- gGGuCGGCGgGCCCGGcgggaccguggccGUcGACGGcGCCGGc -3'
miRNA:   3'- -CC-GCCGCaCGGGCC-------------CA-CUGCU-CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.