miRNA display CGI


Results 61 - 80 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11132 5' -63.4 NC_002794.1 + 151584 0.66 0.681378
Target:  5'- cGGCGGCgcgcgccgccgccgcGgGCCCGcGGUuccucggcuGACG-GCCGGc -3'
miRNA:   3'- -CCGCCG---------------CaCGGGC-CCA---------CUGCuCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 121529 0.66 0.677642
Target:  5'- cGGCGGuCGUcucgacggaGCCCGGuGacgacgaGACGAGCuuCGGg -3'
miRNA:   3'- -CCGCC-GCA---------CGGGCC-Ca------CUGCUCG--GCC- -5'
11132 5' -63.4 NC_002794.1 + 87142 0.67 0.658896
Target:  5'- uGGgGGUGcagGCCgggCGGGUGGgGgugcaGGCCGGg -3'
miRNA:   3'- -CCgCCGCa--CGG---GCCCACUgC-----UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 87184 0.67 0.658896
Target:  5'- uGGgGGUGcagGCCgggCGGGUGGgGgugcaGGCCGGg -3'
miRNA:   3'- -CCgCCGCa--CGG---GCCCACUgC-----UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 87100 0.67 0.658896
Target:  5'- uGGgGGUGcagGCCgggCGGGUGGgGgugcaGGCCGGg -3'
miRNA:   3'- -CCgCCGCa--CGG---GCCCACUgC-----UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 100798 0.67 0.653255
Target:  5'- cGCGGCcgcuucugcgccuacGUG-CCGGGcGGCGggGGCCGGc -3'
miRNA:   3'- cCGCCG---------------CACgGGCCCaCUGC--UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 94481 0.67 0.649492
Target:  5'- cGGCGGCGgacgcgGCCgCGGGccgUGGCGGGg--- -3'
miRNA:   3'- -CCGCCGCa-----CGG-GCCC---ACUGCUCggcc -5'
11132 5' -63.4 NC_002794.1 + 53770 0.67 0.649492
Target:  5'- cGGCGGCGggacGCCCGc--GACGcGcCCGGc -3'
miRNA:   3'- -CCGCCGCa---CGGGCccaCUGCuC-GGCC- -5'
11132 5' -63.4 NC_002794.1 + 47323 0.67 0.649492
Target:  5'- gGGUGGgGUGCCCGGcucccgcGGCGgcGGCCu- -3'
miRNA:   3'- -CCGCCgCACGGGCCca-----CUGC--UCGGcc -5'
11132 5' -63.4 NC_002794.1 + 87004 0.67 0.643844
Target:  5'- cGGCGGCGUggguuccgGCgaggguccgcaggauCCGGG-GACcggcgcggcucgGGGCCGGg -3'
miRNA:   3'- -CCGCCGCA--------CG---------------GGCCCaCUG------------CUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 87226 0.67 0.658896
Target:  5'- uGGgGGUGcagGCCgggCGGGUGGgGgugcaGGCCGGg -3'
miRNA:   3'- -CCgCCGCa--CGG---GCCCACUgC-----UCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 117200 0.67 0.658896
Target:  5'- -uCGGCGUcggGCCCGGGcGGCuccGGCCGc -3'
miRNA:   3'- ccGCCGCA---CGGGCCCaCUGc--UCGGCc -5'
11132 5' -63.4 NC_002794.1 + 79444 0.66 0.677642
Target:  5'- cGGCGGCGaccgGCgCGGagacGACGAcGCCGc -3'
miRNA:   3'- -CCGCCGCa---CGgGCCca--CUGCU-CGGCc -5'
11132 5' -63.4 NC_002794.1 + 107241 0.66 0.668281
Target:  5'- gGGCGGCGUcgcggaccugGCCCGGcg---GAGCCGc -3'
miRNA:   3'- -CCGCCGCA----------CGGGCCcacugCUCGGCc -5'
11132 5' -63.4 NC_002794.1 + 133389 0.66 0.668281
Target:  5'- cGGCGGUcaugaucgGCCCGGGggucGACGAuaCGa -3'
miRNA:   3'- -CCGCCGca------CGGGCCCa---CUGCUcgGCc -5'
11132 5' -63.4 NC_002794.1 + 80407 0.66 0.677642
Target:  5'- cGCcGCG-GCCCaGGUGGCGccgGGCgGGg -3'
miRNA:   3'- cCGcCGCaCGGGcCCACUGC---UCGgCC- -5'
11132 5' -63.4 NC_002794.1 + 179989 0.66 0.66453
Target:  5'- aGGCGGUGgccgcgacggcggGCCCGGccacGACGAcgGCCGcGg -3'
miRNA:   3'- -CCGCCGCa------------CGGGCCca--CUGCU--CGGC-C- -5'
11132 5' -63.4 NC_002794.1 + 67959 0.66 0.668281
Target:  5'- aGGaCGGCGgGCCCa---GACGGGUCGGu -3'
miRNA:   3'- -CC-GCCGCaCGGGcccaCUGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 89820 0.66 0.668281
Target:  5'- uGGgGuGCGU-CCUGGG-GaACGAGUCGGu -3'
miRNA:   3'- -CCgC-CGCAcGGGCCCaC-UGCUCGGCC- -5'
11132 5' -63.4 NC_002794.1 + 184482 0.67 0.658896
Target:  5'- cGGCGcGCGgggccccggacGCCCGGGcgGcGCGGGCCc- -3'
miRNA:   3'- -CCGC-CGCa----------CGGGCCCa-C-UGCUCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.