Results 81 - 100 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11132 | 5' | -63.4 | NC_002794.1 | + | 12237 | 0.67 | 0.640077 |
Target: 5'- cGGCGGCGccGUCCGcGGcGcCGAuCCGGa -3' miRNA: 3'- -CCGCCGCa-CGGGC-CCaCuGCUcGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 128161 | 0.67 | 0.640077 |
Target: 5'- cGGCGGCucGCgCCGcG-GACGGGUCGGu -3' miRNA: 3'- -CCGCCGcaCG-GGCcCaCUGCUCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 86354 | 0.67 | 0.640077 |
Target: 5'- gGGCcGCGcccgaccggaUGcCCCGGGc--CGAGCCGGg -3' miRNA: 3'- -CCGcCGC----------AC-GGGCCCacuGCUCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 75479 | 0.67 | 0.630656 |
Target: 5'- cGGCGcCGagacgGCCCGcGU-ACGAGCCGGc -3' miRNA: 3'- -CCGCcGCa----CGGGCcCAcUGCUCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 70294 | 0.67 | 0.630656 |
Target: 5'- aGGcCGGgGggGCCCGGGcgcGAaGAGCCGc -3' miRNA: 3'- -CC-GCCgCa-CGGGCCCa--CUgCUCGGCc -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 112296 | 0.67 | 0.625004 |
Target: 5'- gGGCGGCcc-CCCGGGUccgacuucggcgccGACGgcggggagcgcgccGGCCGGc -3' miRNA: 3'- -CCGCCGcacGGGCCCA--------------CUGC--------------UCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 13351 | 0.67 | 0.622178 |
Target: 5'- uGGCGGCGccccucGCCCGGGcccuccucccccuCGAGCCc- -3' miRNA: 3'- -CCGCCGCa-----CGGGCCCacu----------GCUCGGcc -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 87004 | 0.67 | 0.643844 |
Target: 5'- cGGCGGCGUggguuccgGCgaggguccgcaggauCCGGG-GACcggcgcggcucgGGGCCGGg -3' miRNA: 3'- -CCGCCGCA--------CG---------------GGCCCaCUG------------CUCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 47323 | 0.67 | 0.649492 |
Target: 5'- gGGUGGgGUGCCCGGcucccgcGGCGgcGGCCu- -3' miRNA: 3'- -CCGCCgCACGGGCCca-----CUGC--UCGGcc -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 53770 | 0.67 | 0.649492 |
Target: 5'- cGGCGGCGggacGCCCGc--GACGcGcCCGGc -3' miRNA: 3'- -CCGCCGCa---CGGGCccaCUGCuC-GGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 67959 | 0.66 | 0.668281 |
Target: 5'- aGGaCGGCGgGCCCa---GACGGGUCGGu -3' miRNA: 3'- -CC-GCCGCaCGGGcccaCUGCUCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 89820 | 0.66 | 0.668281 |
Target: 5'- uGGgGuGCGU-CCUGGG-GaACGAGUCGGu -3' miRNA: 3'- -CCgC-CGCAcGGGCCCaC-UGCUCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 184482 | 0.67 | 0.658896 |
Target: 5'- cGGCGcGCGgggccccggacGCCCGGGcgGcGCGGGCCc- -3' miRNA: 3'- -CCGC-CGCa----------CGGGCCCa-C-UGCUCGGcc -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 117200 | 0.67 | 0.658896 |
Target: 5'- -uCGGCGUcggGCCCGGGcGGCuccGGCCGc -3' miRNA: 3'- ccGCCGCA---CGGGCCCaCUGc--UCGGCc -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 87226 | 0.67 | 0.658896 |
Target: 5'- uGGgGGUGcagGCCgggCGGGUGGgGgugcaGGCCGGg -3' miRNA: 3'- -CCgCCGCa--CGG---GCCCACUgC-----UCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 87142 | 0.67 | 0.658896 |
Target: 5'- uGGgGGUGcagGCCgggCGGGUGGgGgugcaGGCCGGg -3' miRNA: 3'- -CCgCCGCa--CGG---GCCCACUgC-----UCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 87184 | 0.67 | 0.658896 |
Target: 5'- uGGgGGUGcagGCCgggCGGGUGGgGgugcaGGCCGGg -3' miRNA: 3'- -CCgCCGCa--CGG---GCCCACUgC-----UCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 87100 | 0.67 | 0.658896 |
Target: 5'- uGGgGGUGcagGCCgggCGGGUGGgGgugcaGGCCGGg -3' miRNA: 3'- -CCgCCGCa--CGG---GCCCACUgC-----UCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 100798 | 0.67 | 0.653255 |
Target: 5'- cGCGGCcgcuucugcgccuacGUG-CCGGGcGGCGggGGCCGGc -3' miRNA: 3'- cCGCCG---------------CACgGGCCCaCUGC--UCGGCC- -5' |
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11132 | 5' | -63.4 | NC_002794.1 | + | 94481 | 0.67 | 0.649492 |
Target: 5'- cGGCGGCGgacgcgGCCgCGGGccgUGGCGGGg--- -3' miRNA: 3'- -CCGCCGCa-----CGG-GCCC---ACUGCUCggcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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