miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11133 3' -56.8 NC_002794.1 + 122474 0.66 0.945644
Target:  5'- cGCGCucgcccagGcCGGGcugaaCGAGuCGGCGCCGCa -3'
miRNA:   3'- cCGCG--------CaGCCCua---GCUC-GUUGUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 124506 0.66 0.945644
Target:  5'- aGuCGCGUCGGccgCGAGaCAAggaGCCGCc -3'
miRNA:   3'- cC-GCGCAGCCcuaGCUC-GUUg--UGGCG- -5'
11133 3' -56.8 NC_002794.1 + 48442 0.66 0.945219
Target:  5'- uGGCgGCGgccaUCGGGAcacagccgccacgUCaGGGCGAaGCCGCc -3'
miRNA:   3'- -CCG-CGC----AGCCCU-------------AG-CUCGUUgUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 155515 0.66 0.945219
Target:  5'- gGGcCGCcuguuccaGUCGGGuuUgGAGCuguugcaccgacgGACGCCGCa -3'
miRNA:   3'- -CC-GCG--------CAGCCCu-AgCUCG-------------UUGUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 182797 0.66 0.944361
Target:  5'- aGCGCacgGUCGcGGUCGAcagcucguccagccGCGGCACCGa -3'
miRNA:   3'- cCGCG---CAGCcCUAGCU--------------CGUUGUGGCg -5'
11133 3' -56.8 NC_002794.1 + 152797 0.66 0.943058
Target:  5'- cGCGCGagcugcugcucccgaUCGGGGUgcCGuGCGgACACgGCg -3'
miRNA:   3'- cCGCGC---------------AGCCCUA--GCuCGU-UGUGgCG- -5'
11133 3' -56.8 NC_002794.1 + 33601 0.66 0.942619
Target:  5'- cGGaCGCGcauccccaacuccaCGGaccugcaGAUCGuGCGGCACCGCc -3'
miRNA:   3'- -CC-GCGCa-------------GCC-------CUAGCuCGUUGUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 162024 0.66 0.94129
Target:  5'- cGGCcauuucCGauuacccaUCGGGGcgUGAGCcGCACCGCg -3'
miRNA:   3'- -CCGc-----GC--------AGCCCUa-GCUCGuUGUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 29219 0.66 0.94129
Target:  5'- cGGCGgcCGUCGGccgcCGAGCAGagaugaaGCUGCg -3'
miRNA:   3'- -CCGC--GCAGCCcua-GCUCGUUg------UGGCG- -5'
11133 3' -56.8 NC_002794.1 + 182352 0.66 0.94129
Target:  5'- gGGCGgG-CGGGugacCGGGCG-CACgGCc -3'
miRNA:   3'- -CCGCgCaGCCCua--GCUCGUuGUGgCG- -5'
11133 3' -56.8 NC_002794.1 + 125450 0.66 0.94129
Target:  5'- aGgGCGaCGGcGG-CGAGCAcgGCCGCg -3'
miRNA:   3'- cCgCGCaGCC-CUaGCUCGUugUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 103590 0.66 0.94129
Target:  5'- aGCG-GUCGGGcaggcagCG-GCGGCACgCGCu -3'
miRNA:   3'- cCGCgCAGCCCua-----GCuCGUUGUG-GCG- -5'
11133 3' -56.8 NC_002794.1 + 89734 0.66 0.94129
Target:  5'- cGGCGUcgGUCcuugGGGAuUCGcggcgauuGGCAGCuCCGCg -3'
miRNA:   3'- -CCGCG--CAG----CCCU-AGC--------UCGUUGuGGCG- -5'
11133 3' -56.8 NC_002794.1 + 107535 0.66 0.94129
Target:  5'- cGGCGCGgcgcCGG---CG-GCGACgACCGCg -3'
miRNA:   3'- -CCGCGCa---GCCcuaGCuCGUUG-UGGCG- -5'
11133 3' -56.8 NC_002794.1 + 80166 0.66 0.94129
Target:  5'- uGGCggaugGCGUCGaGGcGUUGGGguAUACCGg -3'
miRNA:   3'- -CCG-----CGCAGC-CC-UAGCUCguUGUGGCg -5'
11133 3' -56.8 NC_002794.1 + 32610 0.66 0.94129
Target:  5'- cGGgGCcg-GGGAUCGGGCc-CGCCGa -3'
miRNA:   3'- -CCgCGcagCCCUAGCUCGuuGUGGCg -5'
11133 3' -56.8 NC_002794.1 + 115865 0.66 0.94129
Target:  5'- cGCGCGa-GGGGUCcgGGGCGuccgggGCGuCCGCg -3'
miRNA:   3'- cCGCGCagCCCUAG--CUCGU------UGU-GGCG- -5'
11133 3' -56.8 NC_002794.1 + 65935 0.66 0.94129
Target:  5'- cGGUgGCGUCGGcGGcgguaucgucgCGAGCGGCGgCGUc -3'
miRNA:   3'- -CCG-CGCAGCC-CUa----------GCUCGUUGUgGCG- -5'
11133 3' -56.8 NC_002794.1 + 11773 0.66 0.940842
Target:  5'- uGCGaCGcucaCGGGAUCGccgcgguguccguGGCGcCGCCGCc -3'
miRNA:   3'- cCGC-GCa---GCCCUAGC-------------UCGUuGUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 110337 0.66 0.936715
Target:  5'- cGCGCGg-GGGGUCuccgccguGGCGACGCCu- -3'
miRNA:   3'- cCGCGCagCCCUAGc-------UCGUUGUGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.