miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11133 3' -56.8 NC_002794.1 + 184509 0.83 0.1851
Target:  5'- cGGCGCGggccccgcgCGcGGcgCGGGCGACGCCGCc -3'
miRNA:   3'- -CCGCGCa--------GC-CCuaGCUCGUUGUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 143279 0.79 0.295303
Target:  5'- cGGCGCcggccgcUCGGGGUCGGGCGgguGCAgCGCg -3'
miRNA:   3'- -CCGCGc------AGCCCUAGCUCGU---UGUgGCG- -5'
11133 3' -56.8 NC_002794.1 + 184596 0.78 0.34444
Target:  5'- cGCGCGgccgCGGGAUCG-GCAACgGCCaGCg -3'
miRNA:   3'- cCGCGCa---GCCCUAGCuCGUUG-UGG-CG- -5'
11133 3' -56.8 NC_002794.1 + 137352 0.78 0.351922
Target:  5'- cGGCGuCGUCGGGGUcuucuucgagcCGGGCgAGCGCCGa -3'
miRNA:   3'- -CCGC-GCAGCCCUA-----------GCUCG-UUGUGGCg -5'
11133 3' -56.8 NC_002794.1 + 114724 0.77 0.391032
Target:  5'- cGGCgGCGgcucCGGGuucGUCGAGcCGGCGCCGCc -3'
miRNA:   3'- -CCG-CGCa---GCCC---UAGCUC-GUUGUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 103388 0.77 0.406619
Target:  5'- uGGCGgGgguagaugaGGGGcaccacgUCGGGCAGCGCCGCg -3'
miRNA:   3'- -CCGCgCag-------CCCU-------AGCUCGUUGUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 48634 0.77 0.40745
Target:  5'- cGGC-CGUCGGGGcccgCGAGC--CGCCGCa -3'
miRNA:   3'- -CCGcGCAGCCCUa---GCUCGuuGUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 121044 0.76 0.43287
Target:  5'- cGGCGCGUCGGGcgccgCGAagaaggacGCGAagaaaACCGCg -3'
miRNA:   3'- -CCGCGCAGCCCua---GCU--------CGUUg----UGGCG- -5'
11133 3' -56.8 NC_002794.1 + 34838 0.76 0.43287
Target:  5'- cGGCGcCGgagCGGGcGUCgGAGCGgGCGCCGCg -3'
miRNA:   3'- -CCGC-GCa--GCCC-UAG-CUCGU-UGUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 71305 0.76 0.43287
Target:  5'- cGGCGCGcUCGGGcggCGAGC-GCGCCa- -3'
miRNA:   3'- -CCGCGC-AGCCCua-GCUCGuUGUGGcg -5'
11133 3' -56.8 NC_002794.1 + 111765 0.76 0.441547
Target:  5'- cGGCGcCGUCGGGG-CGGGCucguucgucaggAGCGcCCGCa -3'
miRNA:   3'- -CCGC-GCAGCCCUaGCUCG------------UUGU-GGCG- -5'
11133 3' -56.8 NC_002794.1 + 117202 0.76 0.450321
Target:  5'- --gGCGUCGGGccCGGGCGGCuccgGCCGCg -3'
miRNA:   3'- ccgCGCAGCCCuaGCUCGUUG----UGGCG- -5'
11133 3' -56.8 NC_002794.1 + 130150 0.76 0.450321
Target:  5'- cGGCGCGagcgCGGGAUCacgcgcgcgaGAGC--CGCCGCa -3'
miRNA:   3'- -CCGCGCa---GCCCUAG----------CUCGuuGUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 62475 0.76 0.450321
Target:  5'- aGGCGCGccUCGacgagcgcgaguGGAcggCGGGCGGCGCCGCc -3'
miRNA:   3'- -CCGCGC--AGC------------CCUa--GCUCGUUGUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 108167 0.76 0.462763
Target:  5'- cGGCGCGaagacgccgcgacgCGcGGAcugCGAGCGGCGCUGCg -3'
miRNA:   3'- -CCGCGCa-------------GC-CCUa--GCUCGUUGUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 12219 0.75 0.477201
Target:  5'- cGGCgGCGUCGGcGG-CGccGGCGGCGCCGUc -3'
miRNA:   3'- -CCG-CGCAGCC-CUaGC--UCGUUGUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 42597 0.75 0.495555
Target:  5'- gGGCGCGgcggcCGGGAgCGGGCucucucGACgACCGCg -3'
miRNA:   3'- -CCGCGCa----GCCCUaGCUCG------UUG-UGGCG- -5'
11133 3' -56.8 NC_002794.1 + 119492 0.75 0.495555
Target:  5'- cGGCuGCGuccUCGGGGUCGucGGCGGCgcggagccgGCCGCg -3'
miRNA:   3'- -CCG-CGC---AGCCCUAGC--UCGUUG---------UGGCG- -5'
11133 3' -56.8 NC_002794.1 + 185180 0.75 0.503919
Target:  5'- cGGCGCgGUCGGcgcGGUCGGcGCGgucaucgcggcucGCGCCGCg -3'
miRNA:   3'- -CCGCG-CAGCC---CUAGCU-CGU-------------UGUGGCG- -5'
11133 3' -56.8 NC_002794.1 + 91233 0.75 0.514223
Target:  5'- cGGCGCGgCGGccGUCGGGCuGCGCuCGCg -3'
miRNA:   3'- -CCGCGCaGCCc-UAGCUCGuUGUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.