miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11133 5' -57.1 NC_002794.1 + 153671 0.66 0.926937
Target:  5'- cCGcCGGUuguGAGGCuCGAcgcgcGACCGgcGACc -3'
miRNA:   3'- aGC-GCCAu--CUCCG-GCU-----CUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 126592 0.66 0.926937
Target:  5'- aC-CGGgacuGAGcGCCGAGGCCGGcgccGACg -3'
miRNA:   3'- aGcGCCau--CUC-CGGCUCUGGCUa---CUG- -5'
11133 5' -57.1 NC_002794.1 + 108450 0.66 0.926937
Target:  5'- cUCGCGGcGGcGGCCcgccggcacGGGCCGAggGGCg -3'
miRNA:   3'- -AGCGCCaUCuCCGGc--------UCUGGCUa-CUG- -5'
11133 5' -57.1 NC_002794.1 + 88711 0.66 0.921654
Target:  5'- gUCGgGGUcgauuGGGGCgGuGACCucgGAUGACc -3'
miRNA:   3'- -AGCgCCAu----CUCCGgCuCUGG---CUACUG- -5'
11133 5' -57.1 NC_002794.1 + 104755 0.66 0.916145
Target:  5'- cUCGUGGUAGcGGUCG-GcCCGccGGCg -3'
miRNA:   3'- -AGCGCCAUCuCCGGCuCuGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 96909 0.66 0.916145
Target:  5'- -gGCGGaGGuGGCgGAGgcGCCGgcGACa -3'
miRNA:   3'- agCGCCaUCuCCGgCUC--UGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 6131 0.66 0.916145
Target:  5'- gUUGCGGUcgaucgGGGGGCgGAGcCCGA--GCa -3'
miRNA:   3'- -AGCGCCA------UCUCCGgCUCuGGCUacUG- -5'
11133 5' -57.1 NC_002794.1 + 55281 0.66 0.916145
Target:  5'- -gGCGGUGGcGGCgaCGAGGgCGgcGGCg -3'
miRNA:   3'- agCGCCAUCuCCG--GCUCUgGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 134199 0.66 0.913879
Target:  5'- -gGCuGGUGGGGGCCGucggucgccaagcGACCGccGAUa -3'
miRNA:   3'- agCG-CCAUCUCCGGCu------------CUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 151610 0.66 0.910412
Target:  5'- cCGCGGUuccucGGCUGAcGGCCGGcacuUGGCu -3'
miRNA:   3'- aGCGCCAucu--CCGGCU-CUGGCU----ACUG- -5'
11133 5' -57.1 NC_002794.1 + 42679 0.66 0.910412
Target:  5'- aCGgGGUAc--GCCGAGACCGgcGAg -3'
miRNA:   3'- aGCgCCAUcucCGGCUCUGGCuaCUg -5'
11133 5' -57.1 NC_002794.1 + 188786 0.66 0.910412
Target:  5'- -aGCGGUAGcGGCCGGccccGCCGA--GCg -3'
miRNA:   3'- agCGCCAUCuCCGGCUc---UGGCUacUG- -5'
11133 5' -57.1 NC_002794.1 + 42643 0.66 0.910412
Target:  5'- -aGCGG-AGucgcGGCCGAaGCCGAcGGCg -3'
miRNA:   3'- agCGCCaUCu---CCGGCUcUGGCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 180914 0.66 0.906864
Target:  5'- cCGCGGUcucgccggcgccgucGGAGGUCGGucucgcguccgcGGCCGAcgcgGACu -3'
miRNA:   3'- aGCGCCA---------------UCUCCGGCU------------CUGGCUa---CUG- -5'
11133 5' -57.1 NC_002794.1 + 110168 0.66 0.904455
Target:  5'- gUCGCGGggcauGAGGCuCGAGAUgGGccGCu -3'
miRNA:   3'- -AGCGCCau---CUCCG-GCUCUGgCUacUG- -5'
11133 5' -57.1 NC_002794.1 + 121397 0.66 0.898277
Target:  5'- cCGCGGccGGcGCCGGGACCGc-GACc -3'
miRNA:   3'- aGCGCCauCUcCGGCUCUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 32304 0.66 0.898277
Target:  5'- cCGCGGcGGccgcgccGGCCGcGGCCGGaGACa -3'
miRNA:   3'- aGCGCCaUCu------CCGGCuCUGGCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 98936 0.66 0.898277
Target:  5'- gCGCGGccgggaAGGGGCUGGGGCuCGugcugGGCg -3'
miRNA:   3'- aGCGCCa-----UCUCCGGCUCUG-GCua---CUG- -5'
11133 5' -57.1 NC_002794.1 + 72421 0.67 0.887939
Target:  5'- cCGCGGcGGAGGaggagccggcggaGGGACCGgcGGCg -3'
miRNA:   3'- aGCGCCaUCUCCgg-----------CUCUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 4177 0.67 0.885269
Target:  5'- gUCGCGGUGGGucGUCGAGGCaaggCGAugcugUGACg -3'
miRNA:   3'- -AGCGCCAUCUc-CGGCUCUG----GCU-----ACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.