miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11133 5' -57.1 NC_002794.1 + 58960 0.67 0.864181
Target:  5'- cCGCucuucGUGGAGGCCGAGcgccuGCgCGAcGACg -3'
miRNA:   3'- aGCGc----CAUCUCCGGCUC-----UG-GCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 80423 0.67 0.856749
Target:  5'- gCGcCGGgcGGGGCCGccGCCGgcGGCc -3'
miRNA:   3'- aGC-GCCauCUCCGGCucUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 176422 0.67 0.871414
Target:  5'- gUGaCGGUcGAGGuuaCCGAGACgaCGGUGACu -3'
miRNA:   3'- aGC-GCCAuCUCC---GGCUCUG--GCUACUG- -5'
11133 5' -57.1 NC_002794.1 + 102859 0.67 0.871414
Target:  5'- cCGCGGcgUGGuGcGCCGGGAUCGGuuucUGGCc -3'
miRNA:   3'- aGCGCC--AUCuC-CGGCUCUGGCU----ACUG- -5'
11133 5' -57.1 NC_002794.1 + 72421 0.67 0.887939
Target:  5'- cCGCGGcGGAGGaggagccggcggaGGGACCGgcGGCg -3'
miRNA:   3'- aGCGCCaUCUCCgg-----------CUCUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 4177 0.67 0.885269
Target:  5'- gUCGCGGUGGGucGUCGAGGCaaggCGAugcugUGACg -3'
miRNA:   3'- -AGCGCCAUCUc-CGGCUCUG----GCU-----ACUG- -5'
11133 5' -57.1 NC_002794.1 + 52767 0.67 0.878445
Target:  5'- cCGCGGcccGGGCCGcgGGAUCG-UGACg -3'
miRNA:   3'- aGCGCCaucUCCGGC--UCUGGCuACUG- -5'
11133 5' -57.1 NC_002794.1 + 92317 0.67 0.885269
Target:  5'- gCGCGGgcggcGGGGGCCcGGGCgGgcGGCu -3'
miRNA:   3'- aGCGCCa----UCUCCGGcUCUGgCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 94215 0.68 0.82434
Target:  5'- gUGaCGGUGGcggcgacGGGCgGgcGGGCCGGUGACg -3'
miRNA:   3'- aGC-GCCAUC-------UCCGgC--UCUGGCUACUG- -5'
11133 5' -57.1 NC_002794.1 + 126207 0.68 0.820188
Target:  5'- aCGUGGgcGAGGgccagcgguacaagaUCGGGACCG-UGGCg -3'
miRNA:   3'- aGCGCCauCUCC---------------GGCUCUGGCuACUG- -5'
11133 5' -57.1 NC_002794.1 + 55358 0.68 0.833327
Target:  5'- -gGCGGccgAGGcGGCCGAGgcgGCCGA-GGCg -3'
miRNA:   3'- agCGCCa--UCU-CCGGCUC---UGGCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 188261 0.68 0.825165
Target:  5'- -gGCGGUAGcggcGGGCCGGGuaGCgGAUG-Ca -3'
miRNA:   3'- agCGCCAUC----UCCGGCUC--UGgCUACuG- -5'
11133 5' -57.1 NC_002794.1 + 108617 0.68 0.833327
Target:  5'- gUCGCGGUGGuGuGUCGGaACUGcgGGCa -3'
miRNA:   3'- -AGCGCCAUCuC-CGGCUcUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 94482 0.68 0.833327
Target:  5'- -gGCGGcGGAcgcGGCCGcGGGCCG-UGGCg -3'
miRNA:   3'- agCGCCaUCU---CCGGC-UCUGGCuACUG- -5'
11133 5' -57.1 NC_002794.1 + 55394 0.68 0.833327
Target:  5'- -gGCGGccgAGGcGGCCGAGgcgGCCGA-GGCg -3'
miRNA:   3'- agCGCCa--UCU-CCGGCUC---UGGCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 35343 0.68 0.841316
Target:  5'- uUCGCGGUcGAGGCCcu-GCCccUGACg -3'
miRNA:   3'- -AGCGCCAuCUCCGGcucUGGcuACUG- -5'
11133 5' -57.1 NC_002794.1 + 115997 0.68 0.841316
Target:  5'- cCGCGG-AGAccGCgGAGACCGcgGUGGCg -3'
miRNA:   3'- aGCGCCaUCUc-CGgCUCUGGC--UACUG- -5'
11133 5' -57.1 NC_002794.1 + 89395 0.68 0.841316
Target:  5'- gUCGCGGU-GAGGuCCGuGGAgCGccGGCg -3'
miRNA:   3'- -AGCGCCAuCUCC-GGC-UCUgGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 191887 0.68 0.849126
Target:  5'- -gGCGGcGGAGGCgggaucggcacCGGGACCGGcUGAa -3'
miRNA:   3'- agCGCCaUCUCCG-----------GCUCUGGCU-ACUg -5'
11133 5' -57.1 NC_002794.1 + 43478 0.68 0.848353
Target:  5'- cUCGUGGUuGAGGaagcggauccccuCCGccAGGCCGGUGAa -3'
miRNA:   3'- -AGCGCCAuCUCC-------------GGC--UCUGGCUACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.