Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11133 | 5' | -57.1 | NC_002794.1 | + | 128261 | 0.79 | 0.265737 |
Target: 5'- gUCGCGGUcGGGGCCGAGcgcggaGCCGAcGGCc -3' miRNA: 3'- -AGCGCCAuCUCCGGCUC------UGGCUaCUG- -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 32584 | 0.78 | 0.297854 |
Target: 5'- -gGCGGUGccGGGGCCGGGGCCGG-GGCc -3' miRNA: 3'- agCGCCAU--CUCCGGCUCUGGCUaCUG- -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 56311 | 0.77 | 0.355339 |
Target: 5'- gUCGCGGUcgcuGGcGGCCGuGGCCGgcGACg -3' miRNA: 3'- -AGCGCCA----UCuCCGGCuCUGGCuaCUG- -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 139851 | 0.76 | 0.403323 |
Target: 5'- -aGCGG--GAGGCCGAcGCUGAUGACg -3' miRNA: 3'- agCGCCauCUCCGGCUcUGGCUACUG- -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 191227 | 0.74 | 0.49546 |
Target: 5'- cUCGCccgAGAGGCCGAGACCGuucgcccgauccgGACg -3' miRNA: 3'- -AGCGccaUCUCCGGCUCUGGCua-----------CUG- -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 55210 | 0.74 | 0.510495 |
Target: 5'- gCGCGGcGGAGGCCGGcggucgaGCCGAcGACg -3' miRNA: 3'- aGCGCCaUCUCCGGCUc------UGGCUaCUG- -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 120055 | 0.73 | 0.539176 |
Target: 5'- -gGCGGUGGcGGCCgcgGAGGCCGAcgcggcggUGGCg -3' miRNA: 3'- agCGCCAUCuCCGG---CUCUGGCU--------ACUG- -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 51213 | 0.73 | 0.54886 |
Target: 5'- cCGCGG-AGcGGCCGGccGGCCGAUGGg -3' miRNA: 3'- aGCGCCaUCuCCGGCU--CUGGCUACUg -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 142720 | 0.72 | 0.637721 |
Target: 5'- -gGUGGUGGGGGUCGcgguaacgcAGGCCGAgcuUGACc -3' miRNA: 3'- agCGCCAUCUCCGGC---------UCUGGCU---ACUG- -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 140005 | 0.72 | 0.637721 |
Target: 5'- gUGCgGGUGGAGGCCgcgGAGGCCGcgGcCc -3' miRNA: 3'- aGCG-CCAUCUCCGG---CUCUGGCuaCuG- -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 145683 | 0.72 | 0.60789 |
Target: 5'- aCGuCGGUAGAGGUCGAGcUCGAccUGAg -3' miRNA: 3'- aGC-GCCAUCUCCGGCUCuGGCU--ACUg -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 107558 | 0.71 | 0.647666 |
Target: 5'- cCGCGGUgggggaggaggaGGAGGCgGAGACgGcgGAg -3' miRNA: 3'- aGCGCCA------------UCUCCGgCUCUGgCuaCUg -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 102415 | 0.7 | 0.706818 |
Target: 5'- aCGCGGccGuGGCCGAGGCCGcc-ACg -3' miRNA: 3'- aGCGCCauCuCCGGCUCUGGCuacUG- -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 146870 | 0.7 | 0.745166 |
Target: 5'- uUCG-GGUGGGGGgCGcggucGGCCGAUGAUu -3' miRNA: 3'- -AGCgCCAUCUCCgGCu----CUGGCUACUG- -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 41612 | 0.7 | 0.745166 |
Target: 5'- gUCGCGGUAcucGAuGCCGGGAauCCGGUgcGACa -3' miRNA: 3'- -AGCGCCAU---CUcCGGCUCU--GGCUA--CUG- -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 150806 | 0.7 | 0.726145 |
Target: 5'- cCGCGGcGGAcGGCCGAG-CCGcUGGa -3' miRNA: 3'- aGCGCCaUCU-CCGGCUCuGGCuACUg -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 32854 | 0.69 | 0.790933 |
Target: 5'- -aGCGGcAGcGGCCGAG-CCGGcgGGCg -3' miRNA: 3'- agCGCCaUCuCCGGCUCuGGCUa-CUG- -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 121927 | 0.69 | 0.799714 |
Target: 5'- cCGCGGgggaAGAGGCCGAcgcGCUGAUcGAg -3' miRNA: 3'- aGCGCCa---UCUCCGGCUc--UGGCUA-CUg -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 149649 | 0.69 | 0.76289 |
Target: 5'- aUGCGGUucgccgaGGAGGCCGAG--CGggGGCg -3' miRNA: 3'- aGCGCCA-------UCUCCGGCUCugGCuaCUG- -5' |
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11133 | 5' | -57.1 | NC_002794.1 | + | 119898 | 0.69 | 0.808351 |
Target: 5'- -gGCGGaucuUGGcGGCCGAcGCCGggGACa -3' miRNA: 3'- agCGCC----AUCuCCGGCUcUGGCuaCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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