miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11133 5' -57.1 NC_002794.1 + 128261 0.79 0.265737
Target:  5'- gUCGCGGUcGGGGCCGAGcgcggaGCCGAcGGCc -3'
miRNA:   3'- -AGCGCCAuCUCCGGCUC------UGGCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 32584 0.78 0.297854
Target:  5'- -gGCGGUGccGGGGCCGGGGCCGG-GGCc -3'
miRNA:   3'- agCGCCAU--CUCCGGCUCUGGCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 56311 0.77 0.355339
Target:  5'- gUCGCGGUcgcuGGcGGCCGuGGCCGgcGACg -3'
miRNA:   3'- -AGCGCCA----UCuCCGGCuCUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 139851 0.76 0.403323
Target:  5'- -aGCGG--GAGGCCGAcGCUGAUGACg -3'
miRNA:   3'- agCGCCauCUCCGGCUcUGGCUACUG- -5'
11133 5' -57.1 NC_002794.1 + 191227 0.74 0.49546
Target:  5'- cUCGCccgAGAGGCCGAGACCGuucgcccgauccgGACg -3'
miRNA:   3'- -AGCGccaUCUCCGGCUCUGGCua-----------CUG- -5'
11133 5' -57.1 NC_002794.1 + 55210 0.74 0.510495
Target:  5'- gCGCGGcGGAGGCCGGcggucgaGCCGAcGACg -3'
miRNA:   3'- aGCGCCaUCUCCGGCUc------UGGCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 120055 0.73 0.539176
Target:  5'- -gGCGGUGGcGGCCgcgGAGGCCGAcgcggcggUGGCg -3'
miRNA:   3'- agCGCCAUCuCCGG---CUCUGGCU--------ACUG- -5'
11133 5' -57.1 NC_002794.1 + 51213 0.73 0.54886
Target:  5'- cCGCGG-AGcGGCCGGccGGCCGAUGGg -3'
miRNA:   3'- aGCGCCaUCuCCGGCU--CUGGCUACUg -5'
11133 5' -57.1 NC_002794.1 + 145683 0.72 0.60789
Target:  5'- aCGuCGGUAGAGGUCGAGcUCGAccUGAg -3'
miRNA:   3'- aGC-GCCAUCUCCGGCUCuGGCU--ACUg -5'
11133 5' -57.1 NC_002794.1 + 142720 0.72 0.637721
Target:  5'- -gGUGGUGGGGGUCGcgguaacgcAGGCCGAgcuUGACc -3'
miRNA:   3'- agCGCCAUCUCCGGC---------UCUGGCU---ACUG- -5'
11133 5' -57.1 NC_002794.1 + 140005 0.72 0.637721
Target:  5'- gUGCgGGUGGAGGCCgcgGAGGCCGcgGcCc -3'
miRNA:   3'- aGCG-CCAUCUCCGG---CUCUGGCuaCuG- -5'
11133 5' -57.1 NC_002794.1 + 107558 0.71 0.647666
Target:  5'- cCGCGGUgggggaggaggaGGAGGCgGAGACgGcgGAg -3'
miRNA:   3'- aGCGCCA------------UCUCCGgCUCUGgCuaCUg -5'
11133 5' -57.1 NC_002794.1 + 102415 0.7 0.706818
Target:  5'- aCGCGGccGuGGCCGAGGCCGcc-ACg -3'
miRNA:   3'- aGCGCCauCuCCGGCUCUGGCuacUG- -5'
11133 5' -57.1 NC_002794.1 + 150806 0.7 0.726145
Target:  5'- cCGCGGcGGAcGGCCGAG-CCGcUGGa -3'
miRNA:   3'- aGCGCCaUCU-CCGGCUCuGGCuACUg -5'
11133 5' -57.1 NC_002794.1 + 146870 0.7 0.745166
Target:  5'- uUCG-GGUGGGGGgCGcggucGGCCGAUGAUu -3'
miRNA:   3'- -AGCgCCAUCUCCgGCu----CUGGCUACUG- -5'
11133 5' -57.1 NC_002794.1 + 41612 0.7 0.745166
Target:  5'- gUCGCGGUAcucGAuGCCGGGAauCCGGUgcGACa -3'
miRNA:   3'- -AGCGCCAU---CUcCGGCUCU--GGCUA--CUG- -5'
11133 5' -57.1 NC_002794.1 + 149649 0.69 0.76289
Target:  5'- aUGCGGUucgccgaGGAGGCCGAG--CGggGGCg -3'
miRNA:   3'- aGCGCCA-------UCUCCGGCUCugGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 65773 0.69 0.782017
Target:  5'- cCGUGGUGG-GGCCGAG-CgGAUcACa -3'
miRNA:   3'- aGCGCCAUCuCCGGCUCuGgCUAcUG- -5'
11133 5' -57.1 NC_002794.1 + 32854 0.69 0.790933
Target:  5'- -aGCGGcAGcGGCCGAG-CCGGcgGGCg -3'
miRNA:   3'- agCGCCaUCuCCGGCUCuGGCUa-CUG- -5'
11133 5' -57.1 NC_002794.1 + 101252 0.69 0.790933
Target:  5'- gCGCGcagcgGGGGGCCGcccccGGcGCCGGUGGCg -3'
miRNA:   3'- aGCGCca---UCUCCGGC-----UC-UGGCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.