miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11133 5' -57.1 NC_002794.1 + 121927 0.69 0.799714
Target:  5'- cCGCGGgggaAGAGGCCGAcgcGCUGAUcGAg -3'
miRNA:   3'- aGCGCCa---UCUCCGGCUc--UGGCUA-CUg -5'
11133 5' -57.1 NC_002794.1 + 126207 0.68 0.820188
Target:  5'- aCGUGGgcGAGGgccagcgguacaagaUCGGGACCG-UGGCg -3'
miRNA:   3'- aGCGCCauCUCC---------------GGCUCUGGCuACUG- -5'
11133 5' -57.1 NC_002794.1 + 126592 0.66 0.926937
Target:  5'- aC-CGGgacuGAGcGCCGAGGCCGGcgccGACg -3'
miRNA:   3'- aGcGCCau--CUC-CGGCUCUGGCUa---CUG- -5'
11133 5' -57.1 NC_002794.1 + 128261 0.79 0.265737
Target:  5'- gUCGCGGUcGGGGCCGAGcgcggaGCCGAcGGCc -3'
miRNA:   3'- -AGCGCCAuCUCCGGCUC------UGGCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 134199 0.66 0.913879
Target:  5'- -gGCuGGUGGGGGCCGucggucgccaagcGACCGccGAUa -3'
miRNA:   3'- agCG-CCAUCUCCGGCu------------CUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 139851 0.76 0.403323
Target:  5'- -aGCGG--GAGGCCGAcGCUGAUGACg -3'
miRNA:   3'- agCGCCauCUCCGGCUcUGGCUACUG- -5'
11133 5' -57.1 NC_002794.1 + 140005 0.72 0.637721
Target:  5'- gUGCgGGUGGAGGCCgcgGAGGCCGcgGcCc -3'
miRNA:   3'- aGCG-CCAUCUCCGG---CUCUGGCuaCuG- -5'
11133 5' -57.1 NC_002794.1 + 141624 0.67 0.864181
Target:  5'- cUCGCGGUcuagcgacgGGaAGGCCGGcguggccgcGGCCGccGGCg -3'
miRNA:   3'- -AGCGCCA---------UC-UCCGGCU---------CUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 142720 0.72 0.637721
Target:  5'- -gGUGGUGGGGGUCGcgguaacgcAGGCCGAgcuUGACc -3'
miRNA:   3'- agCGCCAUCUCCGGC---------UCUGGCU---ACUG- -5'
11133 5' -57.1 NC_002794.1 + 145683 0.72 0.60789
Target:  5'- aCGuCGGUAGAGGUCGAGcUCGAccUGAg -3'
miRNA:   3'- aGC-GCCAUCUCCGGCUCuGGCU--ACUg -5'
11133 5' -57.1 NC_002794.1 + 146870 0.7 0.745166
Target:  5'- uUCG-GGUGGGGGgCGcggucGGCCGAUGAUu -3'
miRNA:   3'- -AGCgCCAUCUCCgGCu----CUGGCUACUG- -5'
11133 5' -57.1 NC_002794.1 + 147194 0.67 0.8707
Target:  5'- -aGUGGUuGAacucuugccgucgGGCCGGGGCCGG-GGCg -3'
miRNA:   3'- agCGCCAuCU-------------CCGGCUCUGGCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 149649 0.69 0.76289
Target:  5'- aUGCGGUucgccgaGGAGGCCGAG--CGggGGCg -3'
miRNA:   3'- aGCGCCA-------UCUCCGGCUCugGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 150806 0.7 0.726145
Target:  5'- cCGCGGcGGAcGGCCGAG-CCGcUGGa -3'
miRNA:   3'- aGCGCCaUCU-CCGGCUCuGGCuACUg -5'
11133 5' -57.1 NC_002794.1 + 151610 0.66 0.910412
Target:  5'- cCGCGGUuccucGGCUGAcGGCCGGcacuUGGCu -3'
miRNA:   3'- aGCGCCAucu--CCGGCU-CUGGCU----ACUG- -5'
11133 5' -57.1 NC_002794.1 + 153671 0.66 0.926937
Target:  5'- cCGcCGGUuguGAGGCuCGAcgcgcGACCGgcGACc -3'
miRNA:   3'- aGC-GCCAu--CUCCG-GCU-----CUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 176422 0.67 0.871414
Target:  5'- gUGaCGGUcGAGGuuaCCGAGACgaCGGUGACu -3'
miRNA:   3'- aGC-GCCAuCUCC---GGCUCUG--GCUACUG- -5'
11133 5' -57.1 NC_002794.1 + 180914 0.66 0.906864
Target:  5'- cCGCGGUcucgccggcgccgucGGAGGUCGGucucgcguccgcGGCCGAcgcgGACu -3'
miRNA:   3'- aGCGCCA---------------UCUCCGGCU------------CUGGCUa---CUG- -5'
11133 5' -57.1 NC_002794.1 + 188261 0.68 0.825165
Target:  5'- -gGCGGUAGcggcGGGCCGGGuaGCgGAUG-Ca -3'
miRNA:   3'- agCGCCAUC----UCCGGCUC--UGgCUACuG- -5'
11133 5' -57.1 NC_002794.1 + 188786 0.66 0.910412
Target:  5'- -aGCGGUAGcGGCCGGccccGCCGA--GCg -3'
miRNA:   3'- agCGCCAUCuCCGGCUc---UGGCUacUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.