miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11133 5' -57.1 NC_002794.1 + 126207 0.68 0.820188
Target:  5'- aCGUGGgcGAGGgccagcgguacaagaUCGGGACCG-UGGCg -3'
miRNA:   3'- aGCGCCauCUCC---------------GGCUCUGGCuACUG- -5'
11133 5' -57.1 NC_002794.1 + 121927 0.69 0.799714
Target:  5'- cCGCGGgggaAGAGGCCGAcgcGCUGAUcGAg -3'
miRNA:   3'- aGCGCCa---UCUCCGGCUc--UGGCUA-CUg -5'
11133 5' -57.1 NC_002794.1 + 121397 0.66 0.898277
Target:  5'- cCGCGGccGGcGCCGGGACCGc-GACc -3'
miRNA:   3'- aGCGCCauCUcCGGCUCUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 120055 0.73 0.539176
Target:  5'- -gGCGGUGGcGGCCgcgGAGGCCGAcgcggcggUGGCg -3'
miRNA:   3'- agCGCCAUCuCCGG---CUCUGGCU--------ACUG- -5'
11133 5' -57.1 NC_002794.1 + 119898 0.69 0.808351
Target:  5'- -gGCGGaucuUGGcGGCCGAcGCCGggGACa -3'
miRNA:   3'- agCGCC----AUCuCCGGCUcUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 115997 0.68 0.841316
Target:  5'- cCGCGG-AGAccGCgGAGACCGcgGUGGCg -3'
miRNA:   3'- aGCGCCaUCUc-CGgCUCUGGC--UACUG- -5'
11133 5' -57.1 NC_002794.1 + 110168 0.66 0.904455
Target:  5'- gUCGCGGggcauGAGGCuCGAGAUgGGccGCu -3'
miRNA:   3'- -AGCGCCau---CUCCG-GCUCUGgCUacUG- -5'
11133 5' -57.1 NC_002794.1 + 108617 0.68 0.833327
Target:  5'- gUCGCGGUGGuGuGUCGGaACUGcgGGCa -3'
miRNA:   3'- -AGCGCCAUCuC-CGGCUcUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 108450 0.66 0.926937
Target:  5'- cUCGCGGcGGcGGCCcgccggcacGGGCCGAggGGCg -3'
miRNA:   3'- -AGCGCCaUCuCCGGc--------UCUGGCUa-CUG- -5'
11133 5' -57.1 NC_002794.1 + 107558 0.71 0.647666
Target:  5'- cCGCGGUgggggaggaggaGGAGGCgGAGACgGcgGAg -3'
miRNA:   3'- aGCGCCA------------UCUCCGgCUCUGgCuaCUg -5'
11133 5' -57.1 NC_002794.1 + 104755 0.66 0.916145
Target:  5'- cUCGUGGUAGcGGUCG-GcCCGccGGCg -3'
miRNA:   3'- -AGCGCCAUCuCCGGCuCuGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 102859 0.67 0.871414
Target:  5'- cCGCGGcgUGGuGcGCCGGGAUCGGuuucUGGCc -3'
miRNA:   3'- aGCGCC--AUCuC-CGGCUCUGGCU----ACUG- -5'
11133 5' -57.1 NC_002794.1 + 102415 0.7 0.706818
Target:  5'- aCGCGGccGuGGCCGAGGCCGcc-ACg -3'
miRNA:   3'- aGCGCCauCuCCGGCUCUGGCuacUG- -5'
11133 5' -57.1 NC_002794.1 + 101252 0.69 0.790933
Target:  5'- gCGCGcagcgGGGGGCCGcccccGGcGCCGGUGGCg -3'
miRNA:   3'- aGCGCca---UCUCCGGC-----UC-UGGCUACUG- -5'
11133 5' -57.1 NC_002794.1 + 98936 0.66 0.898277
Target:  5'- gCGCGGccgggaAGGGGCUGGGGCuCGugcugGGCg -3'
miRNA:   3'- aGCGCCa-----UCUCCGGCUCUG-GCua---CUG- -5'
11133 5' -57.1 NC_002794.1 + 96909 0.66 0.916145
Target:  5'- -gGCGGaGGuGGCgGAGgcGCCGgcGACa -3'
miRNA:   3'- agCGCCaUCuCCGgCUC--UGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 94482 0.68 0.833327
Target:  5'- -gGCGGcGGAcgcGGCCGcGGGCCG-UGGCg -3'
miRNA:   3'- agCGCCaUCU---CCGGC-UCUGGCuACUG- -5'
11133 5' -57.1 NC_002794.1 + 94215 0.68 0.82434
Target:  5'- gUGaCGGUGGcggcgacGGGCgGgcGGGCCGGUGACg -3'
miRNA:   3'- aGC-GCCAUC-------UCCGgC--UCUGGCUACUG- -5'
11133 5' -57.1 NC_002794.1 + 92317 0.67 0.885269
Target:  5'- gCGCGGgcggcGGGGGCCcGGGCgGgcGGCu -3'
miRNA:   3'- aGCGCCa----UCUCCGGcUCUGgCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 89395 0.68 0.841316
Target:  5'- gUCGCGGU-GAGGuCCGuGGAgCGccGGCg -3'
miRNA:   3'- -AGCGCCAuCUCC-GGC-UCUgGCuaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.