miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11133 5' -57.1 NC_002794.1 + 88711 0.66 0.921654
Target:  5'- gUCGgGGUcgauuGGGGCgGuGACCucgGAUGACc -3'
miRNA:   3'- -AGCgCCAu----CUCCGgCuCUGG---CUACUG- -5'
11133 5' -57.1 NC_002794.1 + 80423 0.67 0.856749
Target:  5'- gCGcCGGgcGGGGCCGccGCCGgcGGCc -3'
miRNA:   3'- aGC-GCCauCUCCGGCucUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 72421 0.67 0.887939
Target:  5'- cCGCGGcGGAGGaggagccggcggaGGGACCGgcGGCg -3'
miRNA:   3'- aGCGCCaUCUCCgg-----------CUCUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 65773 0.69 0.782017
Target:  5'- cCGUGGUGG-GGCCGAG-CgGAUcACa -3'
miRNA:   3'- aGCGCCAUCuCCGGCUCuGgCUAcUG- -5'
11133 5' -57.1 NC_002794.1 + 58960 0.67 0.864181
Target:  5'- cCGCucuucGUGGAGGCCGAGcgccuGCgCGAcGACg -3'
miRNA:   3'- aGCGc----CAUCUCCGGCUC-----UG-GCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 56311 0.77 0.355339
Target:  5'- gUCGCGGUcgcuGGcGGCCGuGGCCGgcGACg -3'
miRNA:   3'- -AGCGCCA----UCuCCGGCuCUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 55394 0.68 0.833327
Target:  5'- -gGCGGccgAGGcGGCCGAGgcgGCCGA-GGCg -3'
miRNA:   3'- agCGCCa--UCU-CCGGCUC---UGGCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 55358 0.68 0.833327
Target:  5'- -gGCGGccgAGGcGGCCGAGgcgGCCGA-GGCg -3'
miRNA:   3'- agCGCCa--UCU-CCGGCUC---UGGCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 55281 0.66 0.916145
Target:  5'- -gGCGGUGGcGGCgaCGAGGgCGgcGGCg -3'
miRNA:   3'- agCGCCAUCuCCG--GCUCUgGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 55210 0.74 0.510495
Target:  5'- gCGCGGcGGAGGCCGGcggucgaGCCGAcGACg -3'
miRNA:   3'- aGCGCCaUCUCCGGCUc------UGGCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 52767 0.67 0.878445
Target:  5'- cCGCGGcccGGGCCGcgGGAUCG-UGACg -3'
miRNA:   3'- aGCGCCaucUCCGGC--UCUGGCuACUG- -5'
11133 5' -57.1 NC_002794.1 + 51213 0.73 0.54886
Target:  5'- cCGCGG-AGcGGCCGGccGGCCGAUGGg -3'
miRNA:   3'- aGCGCCaUCuCCGGCU--CUGGCUACUg -5'
11133 5' -57.1 NC_002794.1 + 43478 0.68 0.848353
Target:  5'- cUCGUGGUuGAGGaagcggauccccuCCGccAGGCCGGUGAa -3'
miRNA:   3'- -AGCGCCAuCUCC-------------GGC--UCUGGCUACUg -5'
11133 5' -57.1 NC_002794.1 + 42679 0.66 0.910412
Target:  5'- aCGgGGUAc--GCCGAGACCGgcGAg -3'
miRNA:   3'- aGCgCCAUcucCGGCUCUGGCuaCUg -5'
11133 5' -57.1 NC_002794.1 + 42643 0.66 0.910412
Target:  5'- -aGCGG-AGucgcGGCCGAaGCCGAcGGCg -3'
miRNA:   3'- agCGCCaUCu---CCGGCUcUGGCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 41612 0.7 0.745166
Target:  5'- gUCGCGGUAcucGAuGCCGGGAauCCGGUgcGACa -3'
miRNA:   3'- -AGCGCCAU---CUcCGGCUCU--GGCUA--CUG- -5'
11133 5' -57.1 NC_002794.1 + 35343 0.68 0.841316
Target:  5'- uUCGCGGUcGAGGCCcu-GCCccUGACg -3'
miRNA:   3'- -AGCGCCAuCUCCGGcucUGGcuACUG- -5'
11133 5' -57.1 NC_002794.1 + 32854 0.69 0.790933
Target:  5'- -aGCGGcAGcGGCCGAG-CCGGcgGGCg -3'
miRNA:   3'- agCGCCaUCuCCGGCUCuGGCUa-CUG- -5'
11133 5' -57.1 NC_002794.1 + 32584 0.78 0.297854
Target:  5'- -gGCGGUGccGGGGCCGGGGCCGG-GGCc -3'
miRNA:   3'- agCGCCAU--CUCCGGCUCUGGCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 32304 0.66 0.898277
Target:  5'- cCGCGGcGGccgcgccGGCCGcGGCCGGaGACa -3'
miRNA:   3'- aGCGCCaUCu------CCGGCuCUGGCUaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.