miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11133 5' -57.1 NC_002794.1 + 88711 0.66 0.921654
Target:  5'- gUCGgGGUcgauuGGGGCgGuGACCucgGAUGACc -3'
miRNA:   3'- -AGCgCCAu----CUCCGgCuCUGG---CUACUG- -5'
11133 5' -57.1 NC_002794.1 + 104755 0.66 0.916145
Target:  5'- cUCGUGGUAGcGGUCG-GcCCGccGGCg -3'
miRNA:   3'- -AGCGCCAUCuCCGGCuCuGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 96909 0.66 0.916145
Target:  5'- -gGCGGaGGuGGCgGAGgcGCCGgcGACa -3'
miRNA:   3'- agCGCCaUCuCCGgCUC--UGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 108450 0.66 0.926937
Target:  5'- cUCGCGGcGGcGGCCcgccggcacGGGCCGAggGGCg -3'
miRNA:   3'- -AGCGCCaUCuCCGGc--------UCUGGCUa-CUG- -5'
11133 5' -57.1 NC_002794.1 + 126592 0.66 0.926937
Target:  5'- aC-CGGgacuGAGcGCCGAGGCCGGcgccGACg -3'
miRNA:   3'- aGcGCCau--CUC-CGGCUCUGGCUa---CUG- -5'
11133 5' -57.1 NC_002794.1 + 121397 0.66 0.898277
Target:  5'- cCGCGGccGGcGCCGGGACCGc-GACc -3'
miRNA:   3'- aGCGCCauCUcCGGCUCUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 110168 0.66 0.904455
Target:  5'- gUCGCGGggcauGAGGCuCGAGAUgGGccGCu -3'
miRNA:   3'- -AGCGCCau---CUCCG-GCUCUGgCUacUG- -5'
11133 5' -57.1 NC_002794.1 + 80423 0.67 0.856749
Target:  5'- gCGcCGGgcGGGGCCGccGCCGgcGGCc -3'
miRNA:   3'- aGC-GCCauCUCCGGCucUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 43478 0.68 0.848353
Target:  5'- cUCGUGGUuGAGGaagcggauccccuCCGccAGGCCGGUGAa -3'
miRNA:   3'- -AGCGCCAuCUCC-------------GGC--UCUGGCUACUg -5'
11133 5' -57.1 NC_002794.1 + 58960 0.67 0.864181
Target:  5'- cCGCucuucGUGGAGGCCGAGcgccuGCgCGAcGACg -3'
miRNA:   3'- aGCGc----CAUCUCCGGCUC-----UG-GCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 141624 0.67 0.864181
Target:  5'- cUCGCGGUcuagcgacgGGaAGGCCGGcguggccgcGGCCGccGGCg -3'
miRNA:   3'- -AGCGCCA---------UC-UCCGGCU---------CUGGCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 147194 0.67 0.8707
Target:  5'- -aGUGGUuGAacucuugccgucgGGCCGGGGCCGG-GGCg -3'
miRNA:   3'- agCGCCAuCU-------------CCGGCUCUGGCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 176422 0.67 0.871414
Target:  5'- gUGaCGGUcGAGGuuaCCGAGACgaCGGUGACu -3'
miRNA:   3'- aGC-GCCAuCUCC---GGCUCUG--GCUACUG- -5'
11133 5' -57.1 NC_002794.1 + 102859 0.67 0.871414
Target:  5'- cCGCGGcgUGGuGcGCCGGGAUCGGuuucUGGCc -3'
miRNA:   3'- aGCGCC--AUCuC-CGGCUCUGGCU----ACUG- -5'
11133 5' -57.1 NC_002794.1 + 92317 0.67 0.885269
Target:  5'- gCGCGGgcggcGGGGGCCcGGGCgGgcGGCu -3'
miRNA:   3'- aGCGCCa----UCUCCGGcUCUGgCuaCUG- -5'
11133 5' -57.1 NC_002794.1 + 52767 0.67 0.878445
Target:  5'- cCGCGGcccGGGCCGcgGGAUCG-UGACg -3'
miRNA:   3'- aGCGCCaucUCCGGC--UCUGGCuACUG- -5'
11133 5' -57.1 NC_002794.1 + 4177 0.67 0.885269
Target:  5'- gUCGCGGUGGGucGUCGAGGCaaggCGAugcugUGACg -3'
miRNA:   3'- -AGCGCCAUCUc-CGGCUCUG----GCU-----ACUG- -5'
11133 5' -57.1 NC_002794.1 + 32304 0.66 0.898277
Target:  5'- cCGCGGcGGccgcgccGGCCGcGGCCGGaGACa -3'
miRNA:   3'- aGCGCCaUCu------CCGGCuCUGGCUaCUG- -5'
11133 5' -57.1 NC_002794.1 + 98936 0.66 0.898277
Target:  5'- gCGCGGccgggaAGGGGCUGGGGCuCGugcugGGCg -3'
miRNA:   3'- aGCGCCa-----UCUCCGGCUCUG-GCua---CUG- -5'
11133 5' -57.1 NC_002794.1 + 72421 0.67 0.887939
Target:  5'- cCGCGGcGGAGGaggagccggcggaGGGACCGgcGGCg -3'
miRNA:   3'- aGCGCCaUCUCCgg-----------CUCUGGCuaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.