miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 3' -56.9 NC_002794.1 + 12219 0.66 0.918888
Target:  5'- cGGCGGCgUCGGCG-GCGCcGGCGGc- -3'
miRNA:   3'- uUCGCCG-AGCUGUgCGUGcUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 138296 0.66 0.918888
Target:  5'- uGGCGGcCUUGGCcCGCACGcuguCGGg- -3'
miRNA:   3'- uUCGCC-GAGCUGuGCGUGCuu--GCCac -5'
11134 3' -56.9 NC_002794.1 + 107068 0.66 0.918888
Target:  5'- -cGCGGCgccgcCGGCAUGUcggagccgACGGGCGGg- -3'
miRNA:   3'- uuCGCCGa----GCUGUGCG--------UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 91880 0.66 0.918888
Target:  5'- uGGCGGCggCGGC-CGCgACGAGCaGUu -3'
miRNA:   3'- uUCGCCGa-GCUGuGCG-UGCUUGcCAc -5'
11134 3' -56.9 NC_002794.1 + 106316 0.66 0.91833
Target:  5'- cGAGCG---CGACGCGCGCGAcgggucgACGGUu -3'
miRNA:   3'- -UUCGCcgaGCUGUGCGUGCU-------UGCCAc -5'
11134 3' -56.9 NC_002794.1 + 32567 0.66 0.913204
Target:  5'- -cGCGGauaGuCGCGCGCG-GCGGUGc -3'
miRNA:   3'- uuCGCCgagCuGUGCGUGCuUGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 130551 0.66 0.913204
Target:  5'- -cGCGGCgUCGcCGCGCACGuguUGGc- -3'
miRNA:   3'- uuCGCCG-AGCuGUGCGUGCuu-GCCac -5'
11134 3' -56.9 NC_002794.1 + 141605 0.66 0.912623
Target:  5'- cGGGCGGCUCGGCGaccggcuCGCggucuaGCG-ACGGg- -3'
miRNA:   3'- -UUCGCCGAGCUGU-------GCG------UGCuUGCCac -5'
11134 3' -56.9 NC_002794.1 + 179657 0.66 0.912623
Target:  5'- cAGGCgGGCUCGccggacgGCACcCGCGGcggcgACGGUGg -3'
miRNA:   3'- -UUCG-CCGAGC-------UGUGcGUGCU-----UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 126276 0.66 0.907893
Target:  5'- uGGCGGCgcugggcuugcugugCGcCGCGCGCcuGGCGGUGc -3'
miRNA:   3'- uUCGCCGa--------------GCuGUGCGUGc-UUGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 131883 0.66 0.907291
Target:  5'- -cGCGGCcucaucUCGGuCGCGCGCGGGCacGUGu -3'
miRNA:   3'- uuCGCCG------AGCU-GUGCGUGCUUGc-CAC- -5'
11134 3' -56.9 NC_002794.1 + 92339 0.66 0.907291
Target:  5'- cGGGCGGCUCGGCgucaACGU-CGAcCGGc- -3'
miRNA:   3'- -UUCGCCGAGCUG----UGCGuGCUuGCCac -5'
11134 3' -56.9 NC_002794.1 + 101507 0.66 0.907291
Target:  5'- cGAGCGGUgCGGCACaCGCcGGCGGg- -3'
miRNA:   3'- -UUCGCCGaGCUGUGcGUGcUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 187827 0.66 0.907291
Target:  5'- gGAGCGcGCUCGGCucgGCGCGCcGAgGGc- -3'
miRNA:   3'- -UUCGC-CGAGCUG---UGCGUGcUUgCCac -5'
11134 3' -56.9 NC_002794.1 + 142234 0.66 0.907291
Target:  5'- gGAGCGGCggaggCGGCG-GUgagACGGACGGg- -3'
miRNA:   3'- -UUCGCCGa----GCUGUgCG---UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 116016 0.66 0.907291
Target:  5'- -cGCGGUggCGAUugGCGCGGGgacCGGa- -3'
miRNA:   3'- uuCGCCGa-GCUGugCGUGCUU---GCCac -5'
11134 3' -56.9 NC_002794.1 + 105549 0.66 0.901152
Target:  5'- cGGCGGCUCGG-GCGaACGGAUagGGUGc -3'
miRNA:   3'- uUCGCCGAGCUgUGCgUGCUUG--CCAC- -5'
11134 3' -56.9 NC_002794.1 + 65249 0.66 0.901152
Target:  5'- cGGCGGCgaucCGGCcuCGC-CGAGCGGc- -3'
miRNA:   3'- uUCGCCGa---GCUGu-GCGuGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 21451 0.66 0.901152
Target:  5'- -cGCGucGCUCGGCGuCGCcgugACGGcaACGGUGg -3'
miRNA:   3'- uuCGC--CGAGCUGU-GCG----UGCU--UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 37286 0.66 0.900525
Target:  5'- -cGCGGCguacaaCGACACGUaggggaacGCGGggcagaagacggaGCGGUGg -3'
miRNA:   3'- uuCGCCGa-----GCUGUGCG--------UGCU-------------UGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.