miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 3' -56.9 NC_002794.1 + 130551 0.66 0.913204
Target:  5'- -cGCGGCgUCGcCGCGCACGuguUGGc- -3'
miRNA:   3'- uuCGCCG-AGCuGUGCGUGCuu-GCCac -5'
11134 3' -56.9 NC_002794.1 + 32567 0.66 0.913204
Target:  5'- -cGCGGauaGuCGCGCGCG-GCGGUGc -3'
miRNA:   3'- uuCGCCgagCuGUGCGUGCuUGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 141605 0.66 0.912623
Target:  5'- cGGGCGGCUCGGCGaccggcuCGCggucuaGCG-ACGGg- -3'
miRNA:   3'- -UUCGCCGAGCUGU-------GCG------UGCuUGCCac -5'
11134 3' -56.9 NC_002794.1 + 131883 0.66 0.907291
Target:  5'- -cGCGGCcucaucUCGGuCGCGCGCGGGCacGUGu -3'
miRNA:   3'- uuCGCCG------AGCU-GUGCGUGCUUGc-CAC- -5'
11134 3' -56.9 NC_002794.1 + 179657 0.66 0.912623
Target:  5'- cAGGCgGGCUCGccggacgGCACcCGCGGcggcgACGGUGg -3'
miRNA:   3'- -UUCG-CCGAGC-------UGUGcGUGCU-----UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 126276 0.66 0.907893
Target:  5'- uGGCGGCgcugggcuugcugugCGcCGCGCGCcuGGCGGUGc -3'
miRNA:   3'- uUCGCCGa--------------GCuGUGCGUGc-UUGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 116016 0.66 0.907291
Target:  5'- -cGCGGUggCGAUugGCGCGGGgacCGGa- -3'
miRNA:   3'- uuCGCCGa-GCUGugCGUGCUU---GCCac -5'
11134 3' -56.9 NC_002794.1 + 142234 0.66 0.907291
Target:  5'- gGAGCGGCggaggCGGCG-GUgagACGGACGGg- -3'
miRNA:   3'- -UUCGCCGa----GCUGUgCG---UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 107224 0.67 0.874381
Target:  5'- cGGGCGGCgcgCGACGgGgGCGGcgucGCGGa- -3'
miRNA:   3'- -UUCGCCGa--GCUGUgCgUGCU----UGCCac -5'
11134 3' -56.9 NC_002794.1 + 113146 0.67 0.874381
Target:  5'- aGGGCGGgCgCGucagcguguaGCGCGCGCGGGCGGc- -3'
miRNA:   3'- -UUCGCC-GaGC----------UGUGCGUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 97423 0.67 0.874381
Target:  5'- aGAGCGGCaacaCGAgGCGCuACGucACGGUu -3'
miRNA:   3'- -UUCGCCGa---GCUgUGCG-UGCu-UGCCAc -5'
11134 3' -56.9 NC_002794.1 + 111171 0.67 0.874381
Target:  5'- -cGCGGUgcagGGCGCGCACGAACu--- -3'
miRNA:   3'- uuCGCCGag--CUGUGCGUGCUUGccac -5'
11134 3' -56.9 NC_002794.1 + 53770 0.67 0.874381
Target:  5'- cGGCGGCgggacgcccgCGACGCGCcCG-GCGGg- -3'
miRNA:   3'- uUCGCCGa---------GCUGUGCGuGCuUGCCac -5'
11134 3' -56.9 NC_002794.1 + 30749 0.67 0.881398
Target:  5'- -cGCGGCU-GGCGCGCugGAGgaucUGGa- -3'
miRNA:   3'- uuCGCCGAgCUGUGCGugCUU----GCCac -5'
11134 3' -56.9 NC_002794.1 + 180871 0.67 0.881398
Target:  5'- gAGGCGGCggaucCGGCGCGCcCGGucucggccGCGGa- -3'
miRNA:   3'- -UUCGCCGa----GCUGUGCGuGCU--------UGCCac -5'
11134 3' -56.9 NC_002794.1 + 107538 0.67 0.881398
Target:  5'- -cGCGGCgcCGGCG-GCgACGAccGCGGUGg -3'
miRNA:   3'- uuCGCCGa-GCUGUgCG-UGCU--UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 94481 0.67 0.881398
Target:  5'- cGGCGGCg-GACGCGgcCGCGGGCcGUGg -3'
miRNA:   3'- uUCGCCGagCUGUGC--GUGCUUGcCAC- -5'
11134 3' -56.9 NC_002794.1 + 51276 0.67 0.881398
Target:  5'- gAGGCaGGCgCGGCcCGCcCGAACGGg- -3'
miRNA:   3'- -UUCG-CCGaGCUGuGCGuGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 149289 0.67 0.881398
Target:  5'- cGGCGGCUCGcuCACGgG-GGGCGGg- -3'
miRNA:   3'- uUCGCCGAGCu-GUGCgUgCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 95817 0.67 0.874381
Target:  5'- gGAGCGGCggCGGC-CGgGgGAGCGGc- -3'
miRNA:   3'- -UUCGCCGa-GCUGuGCgUgCUUGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.