miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 3' -56.9 NC_002794.1 + 79955 0.68 0.828079
Target:  5'- -uGCGaGCUCGugGCGUACGAccccCGGc- -3'
miRNA:   3'- uuCGC-CGAGCugUGCGUGCUu---GCCac -5'
11134 3' -56.9 NC_002794.1 + 145324 0.68 0.819721
Target:  5'- -cGCGGCgggCGGCGCucggGCcCGAGCGGg- -3'
miRNA:   3'- uuCGCCGa--GCUGUG----CGuGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 156553 0.68 0.828079
Target:  5'- -cGUGGaUUCGGCACGCGCcugucugaGAGCGGa- -3'
miRNA:   3'- uuCGCC-GAGCUGUGCGUG--------CUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 98905 0.68 0.836266
Target:  5'- -cGCGGuCUCGACGacuuCAUGAGCGGg- -3'
miRNA:   3'- uuCGCC-GAGCUGUgc--GUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 38651 0.68 0.836266
Target:  5'- cGGaGGCUCGACuauuugacucccGCGCGCGAcccGCGGa- -3'
miRNA:   3'- uUCgCCGAGCUG------------UGCGUGCU---UGCCac -5'
11134 3' -56.9 NC_002794.1 + 54240 0.68 0.844273
Target:  5'- gAAGCGGC-CGA-GCGCGCGGuccACGGc- -3'
miRNA:   3'- -UUCGCCGaGCUgUGCGUGCU---UGCCac -5'
11134 3' -56.9 NC_002794.1 + 120105 0.68 0.836266
Target:  5'- cGAGCGcGCcgcgCGugACGCGCGcGACGGc- -3'
miRNA:   3'- -UUCGC-CGa---GCugUGCGUGC-UUGCCac -5'
11134 3' -56.9 NC_002794.1 + 82445 0.68 0.844273
Target:  5'- -cGCGGCUCGGCACGguCGGccCGa-- -3'
miRNA:   3'- uuCGCCGAGCUGUGCguGCUu-GCcac -5'
11134 3' -56.9 NC_002794.1 + 66742 0.69 0.775618
Target:  5'- cGGUGGCggCGGCGCGUACGAcCGcUGg -3'
miRNA:   3'- uUCGCCGa-GCUGUGCGUGCUuGCcAC- -5'
11134 3' -56.9 NC_002794.1 + 156398 0.69 0.766392
Target:  5'- aGAGCGGC-CGGCGC-CGCGGccGCGGc- -3'
miRNA:   3'- -UUCGCCGaGCUGUGcGUGCU--UGCCac -5'
11134 3' -56.9 NC_002794.1 + 57472 0.69 0.775618
Target:  5'- -uGCGcccGCUCGuCACGCGCGAccaGGUGc -3'
miRNA:   3'- uuCGC---CGAGCuGUGCGUGCUug-CCAC- -5'
11134 3' -56.9 NC_002794.1 + 50767 0.69 0.766392
Target:  5'- cGGGCGGCggCGACgGCGCGucuCGGGCGGc- -3'
miRNA:   3'- -UUCGCCGa-GCUG-UGCGU---GCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 145892 0.69 0.756111
Target:  5'- gAAGCGGCgagcgCGACgggggagucgaccGCGC-CGAGCGGa- -3'
miRNA:   3'- -UUCGCCGa----GCUG-------------UGCGuGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 94219 0.69 0.775618
Target:  5'- cGGUGGCggCGACggGCGgGCGGGcCGGUGa -3'
miRNA:   3'- uUCGCCGa-GCUG--UGCgUGCUU-GCCAC- -5'
11134 3' -56.9 NC_002794.1 + 82653 0.69 0.775618
Target:  5'- gAAGCGccgcGCUCGACGcCGCGCcGGCGGa- -3'
miRNA:   3'- -UUCGC----CGAGCUGU-GCGUGcUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 184505 0.69 0.775618
Target:  5'- cGGGCGGCgCGGgcccCGCGCGCGGcGCGGg- -3'
miRNA:   3'- -UUCGCCGaGCU----GUGCGUGCU-UGCCac -5'
11134 3' -56.9 NC_002794.1 + 94298 0.69 0.775618
Target:  5'- gGGGCGGCUCgGGCGCGC-CGAugcaaGGa- -3'
miRNA:   3'- -UUCGCCGAG-CUGUGCGuGCUug---CCac -5'
11134 3' -56.9 NC_002794.1 + 112363 0.69 0.783815
Target:  5'- gGGGCGGggagcugcuggaaCUCGGCACGCA-GGGCGGc- -3'
miRNA:   3'- -UUCGCC-------------GAGCUGUGCGUgCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 185178 0.69 0.793689
Target:  5'- -cGCGGCgcggUCGGCGCGguCGGcGCGGUc -3'
miRNA:   3'- uuCGCCG----AGCUGUGCguGCU-UGCCAc -5'
11134 3' -56.9 NC_002794.1 + 104777 0.69 0.757051
Target:  5'- cGGC-GCUcCGACACGC-CGAcagGCGGUGc -3'
miRNA:   3'- uUCGcCGA-GCUGUGCGuGCU---UGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.