miRNA display CGI


Results 81 - 100 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 3' -56.9 NC_002794.1 + 138687 0.67 0.852094
Target:  5'- cGGCGGgUCGugAUGCAaaugaGGGCGGc- -3'
miRNA:   3'- uUCGCCgAGCugUGCGUg----CUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 189645 0.67 0.858969
Target:  5'- uGGCuGGCUgacuagcCGGCugGC-CGAGCGGUc -3'
miRNA:   3'- uUCG-CCGA-------GCUGugCGuGCUUGCCAc -5'
11134 3' -56.9 NC_002794.1 + 115845 0.67 0.859723
Target:  5'- cGGCgGGCUCgGGCcugggACGCGCGAGgGGUc -3'
miRNA:   3'- uUCG-CCGAG-CUG-----UGCGUGCUUgCCAc -5'
11134 3' -56.9 NC_002794.1 + 178291 0.67 0.859723
Target:  5'- cGAGCgacGGCUCGACGCGggagGCGAACGc-- -3'
miRNA:   3'- -UUCG---CCGAGCUGUGCg---UGCUUGCcac -5'
11134 3' -56.9 NC_002794.1 + 91757 0.67 0.859723
Target:  5'- cGGCGGg-CGGCAcCGCGCaGGACGGg- -3'
miRNA:   3'- uUCGCCgaGCUGU-GCGUG-CUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 100057 0.67 0.859723
Target:  5'- --cCGGCUcagCGACACGCugGAGCuGGc- -3'
miRNA:   3'- uucGCCGA---GCUGUGCGugCUUG-CCac -5'
11134 3' -56.9 NC_002794.1 + 142405 0.67 0.867154
Target:  5'- cAGGCGGCgUCGGCGgCGC-CGGGCGcGa- -3'
miRNA:   3'- -UUCGCCG-AGCUGU-GCGuGCUUGC-Cac -5'
11134 3' -56.9 NC_002794.1 + 129081 0.67 0.874381
Target:  5'- uGGCGGCg-GAC-CGUcCGGugGGUGg -3'
miRNA:   3'- uUCGCCGagCUGuGCGuGCUugCCAC- -5'
11134 3' -56.9 NC_002794.1 + 106948 0.67 0.873667
Target:  5'- cGGCGGCgccuggaGACACGCgucgccucgcgcgGCGGccggcacgGCGGUGg -3'
miRNA:   3'- uUCGCCGag-----CUGUGCG-------------UGCU--------UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 46316 0.67 0.86642
Target:  5'- -cGCGGCggCGACgGCGCcgucgccGCGGACGGc- -3'
miRNA:   3'- uuCGCCGa-GCUG-UGCG-------UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 112481 0.67 0.867154
Target:  5'- gGAGCuGCUCGuagcgcucCACGUaccGCGAGCGGUc -3'
miRNA:   3'- -UUCGcCGAGCu-------GUGCG---UGCUUGCCAc -5'
11134 3' -56.9 NC_002794.1 + 116016 0.66 0.907291
Target:  5'- -cGCGGUggCGAUugGCGCGGGgacCGGa- -3'
miRNA:   3'- uuCGCCGa-GCUGugCGUGCUU---GCCac -5'
11134 3' -56.9 NC_002794.1 + 187827 0.66 0.907291
Target:  5'- gGAGCGcGCUCGGCucgGCGCGCcGAgGGc- -3'
miRNA:   3'- -UUCGC-CGAGCUG---UGCGUGcUUgCCac -5'
11134 3' -56.9 NC_002794.1 + 101507 0.66 0.907291
Target:  5'- cGAGCGGUgCGGCACaCGCcGGCGGg- -3'
miRNA:   3'- -UUCGCCGaGCUGUGcGUGcUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 182295 0.66 0.888202
Target:  5'- gGGGCGGgUgGACGgGCagACGGGCGGa- -3'
miRNA:   3'- -UUCGCCgAgCUGUgCG--UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 41291 0.66 0.888202
Target:  5'- cGGCGGCUcCGACGCGgGCcgcGugGGg- -3'
miRNA:   3'- uUCGCCGA-GCUGUGCgUGc--UugCCac -5'
11134 3' -56.9 NC_002794.1 + 120051 0.66 0.888202
Target:  5'- cGGCGGCgguggCGGC-CGCGgaggcCGAcgcgGCGGUGg -3'
miRNA:   3'- uUCGCCGa----GCUGuGCGU-----GCU----UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 127363 0.66 0.888202
Target:  5'- cGGCGGCgCGGC-CGCucgugucgGCGGACGGc- -3'
miRNA:   3'- uUCGCCGaGCUGuGCG--------UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 286 0.66 0.888202
Target:  5'- cGGCGGCccUGGCGCGC-CGAACGc-- -3'
miRNA:   3'- uUCGCCGa-GCUGUGCGuGCUUGCcac -5'
11134 3' -56.9 NC_002794.1 + 142234 0.66 0.907291
Target:  5'- gGAGCGGCggaggCGGCG-GUgagACGGACGGg- -3'
miRNA:   3'- -UUCGCCGa----GCUGUgCG---UGCUUGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.