miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 3' -56.9 NC_002794.1 + 90088 0.79 0.263748
Target:  5'- -uGUGGCUCGGCACGCucuGCGccGCGGUGg -3'
miRNA:   3'- uuCGCCGAGCUGUGCG---UGCu-UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 184063 0.78 0.289337
Target:  5'- -cGCGGCgaagCGGCACGCGCccACGGUGu -3'
miRNA:   3'- uuCGCCGa---GCUGUGCGUGcuUGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 55304 0.77 0.346254
Target:  5'- cGGCGGCgucgCGGCGgGCGCGGGCGGc- -3'
miRNA:   3'- uUCGCCGa---GCUGUgCGUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 116953 0.76 0.377581
Target:  5'- cGGCGGCgUCGGCggGCGCAgGAACGGg- -3'
miRNA:   3'- uUCGCCG-AGCUG--UGCGUgCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 128161 0.76 0.377581
Target:  5'- cGGCGGCUCG-CGC-CGCGGACGGg- -3'
miRNA:   3'- uUCGCCGAGCuGUGcGUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 129049 0.75 0.436799
Target:  5'- -uGCGG-UCGugGCGCGCG-ACGGUGu -3'
miRNA:   3'- uuCGCCgAGCugUGCGUGCuUGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 62080 0.74 0.46926
Target:  5'- cGGCGGCgacgacggcgacgCGGCGCGC-CGGACGGUc -3'
miRNA:   3'- uUCGCCGa------------GCUGUGCGuGCUUGCCAc -5'
11134 3' -56.9 NC_002794.1 + 44259 0.74 0.482214
Target:  5'- cGGGCGGCUCGGC-CGCcGgGGACGGa- -3'
miRNA:   3'- -UUCGCCGAGCUGuGCG-UgCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 144272 0.74 0.501013
Target:  5'- aAGGCGGUcuUCGACACGCucaaGAAccCGGUGg -3'
miRNA:   3'- -UUCGCCG--AGCUGUGCGug--CUU--GCCAC- -5'
11134 3' -56.9 NC_002794.1 + 34734 0.74 0.501013
Target:  5'- cGGGCGGC-CGcagaGCGCGCGAcggcGCGGUGg -3'
miRNA:   3'- -UUCGCCGaGCug--UGCGUGCU----UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 184581 0.74 0.501013
Target:  5'- cGGCGGCggCGGcCACGCGCGGccGCGGg- -3'
miRNA:   3'- uUCGCCGa-GCU-GUGCGUGCU--UGCCac -5'
11134 3' -56.9 NC_002794.1 + 64800 0.74 0.510534
Target:  5'- -cGCGGCgagCGACGC-CGCGGACGGc- -3'
miRNA:   3'- uuCGCCGa--GCUGUGcGUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 129208 0.72 0.578984
Target:  5'- cGAGCGGC-CGACggcgguggauAgGCGCGAACGGg- -3'
miRNA:   3'- -UUCGCCGaGCUG----------UgCGUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 125647 0.72 0.588956
Target:  5'- uAGCGGCguucugccUCGGCGCGC-UGAACGGg- -3'
miRNA:   3'- uUCGCCG--------AGCUGUGCGuGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 137760 0.72 0.598959
Target:  5'- cGGCGGCUCGAagaGCAgGAugGGg- -3'
miRNA:   3'- uUCGCCGAGCUgugCGUgCUugCCac -5'
11134 3' -56.9 NC_002794.1 + 113873 0.72 0.608985
Target:  5'- cAGGCGcGCUCGGCcgcgGCGCGCGucggcGCGGUc -3'
miRNA:   3'- -UUCGC-CGAGCUG----UGCGUGCu----UGCCAc -5'
11134 3' -56.9 NC_002794.1 + 120813 0.72 0.619028
Target:  5'- gGAGCGGCagcugCGACACGCucuCG-ACGGg- -3'
miRNA:   3'- -UUCGCCGa----GCUGUGCGu--GCuUGCCac -5'
11134 3' -56.9 NC_002794.1 + 59195 0.72 0.619028
Target:  5'- uGGCGG-UCGACGCGCACGu-CGGc- -3'
miRNA:   3'- uUCGCCgAGCUGUGCGUGCuuGCCac -5'
11134 3' -56.9 NC_002794.1 + 180759 0.72 0.619028
Target:  5'- cGGCGGCuUCGGCG-GCAacugucCGGGCGGUGg -3'
miRNA:   3'- uUCGCCG-AGCUGUgCGU------GCUUGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 140106 0.72 0.62908
Target:  5'- cGGCGGCgaUCGACgGCGguCG-ACGGUGg -3'
miRNA:   3'- uUCGCCG--AGCUG-UGCguGCuUGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.