miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 3' -56.9 NC_002794.1 + 876 0.71 0.639135
Target:  5'- gAGGCGG-UCGGCguGCGCGCGGGCcgGGUGc -3'
miRNA:   3'- -UUCGCCgAGCUG--UGCGUGCUUG--CCAC- -5'
11134 3' -56.9 NC_002794.1 + 149749 0.71 0.649184
Target:  5'- gGAGCGGCgggaccgcugucUCGGCcuguuggagcggGCGUACGggUGGUGc -3'
miRNA:   3'- -UUCGCCG------------AGCUG------------UGCGUGCuuGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 126241 0.71 0.669236
Target:  5'- -cGUGGCgaUCGugGCGCGCGAggucgGCGGcUGg -3'
miRNA:   3'- uuCGCCG--AGCugUGCGUGCU-----UGCC-AC- -5'
11134 3' -56.9 NC_002794.1 + 35553 0.71 0.669236
Target:  5'- cGGC-GCUCG-CGCGCGCGcgUGGUGg -3'
miRNA:   3'- uUCGcCGAGCuGUGCGUGCuuGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 194775 0.71 0.669236
Target:  5'- cGAGaaCGGC-CGGCACGCGCGcAGCGGc- -3'
miRNA:   3'- -UUC--GCCGaGCUGUGCGUGC-UUGCCac -5'
11134 3' -56.9 NC_002794.1 + 148647 0.71 0.689171
Target:  5'- cGGCGuGCUCGGCuACGCGCcgaccgagGAGCGGa- -3'
miRNA:   3'- uUCGC-CGAGCUG-UGCGUG--------CUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 62436 0.7 0.699074
Target:  5'- cGAGCGucCUCGACACGCACG-GCGaGUu -3'
miRNA:   3'- -UUCGCc-GAGCUGUGCGUGCuUGC-CAc -5'
11134 3' -56.9 NC_002794.1 + 153683 0.7 0.699074
Target:  5'- ---aGGCUCGACGCGCgaccgGCGAcCGGUu -3'
miRNA:   3'- uucgCCGAGCUGUGCG-----UGCUuGCCAc -5'
11134 3' -56.9 NC_002794.1 + 120190 0.7 0.699074
Target:  5'- cAAGCGGUUCaa-GgGCACGAGCGGg- -3'
miRNA:   3'- -UUCGCCGAGcugUgCGUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 102510 0.7 0.708923
Target:  5'- cAGCGGCU-GGCGCGCGC--GCGGg- -3'
miRNA:   3'- uUCGCCGAgCUGUGCGUGcuUGCCac -5'
11134 3' -56.9 NC_002794.1 + 105939 0.7 0.708923
Target:  5'- ---gGGCUgGACGCGCuguACGAACGGcUGg -3'
miRNA:   3'- uucgCCGAgCUGUGCG---UGCUUGCC-AC- -5'
11134 3' -56.9 NC_002794.1 + 138956 0.7 0.708923
Target:  5'- uGGCGuGCUgCGACGCG-GCGGACGGg- -3'
miRNA:   3'- uUCGC-CGA-GCUGUGCgUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 38463 0.7 0.718709
Target:  5'- -cGCGGCcgCGGCGCGCccuuuAUGGGCGGa- -3'
miRNA:   3'- uuCGCCGa-GCUGUGCG-----UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 44428 0.7 0.727456
Target:  5'- cGAGCGGCUCGACGacaccggcgcgccCGCcCGGACGu-- -3'
miRNA:   3'- -UUCGCCGAGCUGU-------------GCGuGCUUGCcac -5'
11134 3' -56.9 NC_002794.1 + 25129 0.7 0.728424
Target:  5'- cGAGCGG---GGCACGCGCGcACGGUa -3'
miRNA:   3'- -UUCGCCgagCUGUGCGUGCuUGCCAc -5'
11134 3' -56.9 NC_002794.1 + 37751 0.7 0.738058
Target:  5'- cGGCGGCgcggCGGCGCcgGCGgGAGCGGc- -3'
miRNA:   3'- uUCGCCGa---GCUGUG--CGUgCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 29091 0.7 0.738058
Target:  5'- -uGCGGCUCGGCucgucguCGuCACGAGCGa-- -3'
miRNA:   3'- uuCGCCGAGCUGu------GC-GUGCUUGCcac -5'
11134 3' -56.9 NC_002794.1 + 68313 0.69 0.747603
Target:  5'- uGGCGGC-CGACGCGUuccGCGGccUGGUGa -3'
miRNA:   3'- uUCGCCGaGCUGUGCG---UGCUu-GCCAC- -5'
11134 3' -56.9 NC_002794.1 + 145892 0.69 0.756111
Target:  5'- gAAGCGGCgagcgCGACgggggagucgaccGCGC-CGAGCGGa- -3'
miRNA:   3'- -UUCGCCGa----GCUG-------------UGCGuGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 104777 0.69 0.757051
Target:  5'- cGGC-GCUcCGACACGC-CGAcagGCGGUGc -3'
miRNA:   3'- uUCGcCGA-GCUGUGCGuGCU---UGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.