Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11134 | 3' | -56.9 | NC_002794.1 | + | 50767 | 0.69 | 0.766392 |
Target: 5'- cGGGCGGCggCGACgGCGCGucuCGGGCGGc- -3' miRNA: 3'- -UUCGCCGa-GCUG-UGCGU---GCUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 156398 | 0.69 | 0.766392 |
Target: 5'- aGAGCGGC-CGGCGC-CGCGGccGCGGc- -3' miRNA: 3'- -UUCGCCGaGCUGUGcGUGCU--UGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 57472 | 0.69 | 0.775618 |
Target: 5'- -uGCGcccGCUCGuCACGCGCGAccaGGUGc -3' miRNA: 3'- uuCGC---CGAGCuGUGCGUGCUug-CCAC- -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 94298 | 0.69 | 0.775618 |
Target: 5'- gGGGCGGCUCgGGCGCGC-CGAugcaaGGa- -3' miRNA: 3'- -UUCGCCGAG-CUGUGCGuGCUug---CCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 66742 | 0.69 | 0.775618 |
Target: 5'- cGGUGGCggCGGCGCGUACGAcCGcUGg -3' miRNA: 3'- uUCGCCGa-GCUGUGCGUGCUuGCcAC- -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 94219 | 0.69 | 0.775618 |
Target: 5'- cGGUGGCggCGACggGCGgGCGGGcCGGUGa -3' miRNA: 3'- uUCGCCGa-GCUG--UGCgUGCUU-GCCAC- -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 82653 | 0.69 | 0.775618 |
Target: 5'- gAAGCGccgcGCUCGACGcCGCGCcGGCGGa- -3' miRNA: 3'- -UUCGC----CGAGCUGU-GCGUGcUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 184505 | 0.69 | 0.775618 |
Target: 5'- cGGGCGGCgCGGgcccCGCGCGCGGcGCGGg- -3' miRNA: 3'- -UUCGCCGaGCU----GUGCGUGCU-UGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 112363 | 0.69 | 0.783815 |
Target: 5'- gGGGCGGggagcugcuggaaCUCGGCACGCA-GGGCGGc- -3' miRNA: 3'- -UUCGCC-------------GAGCUGUGCGUgCUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 56284 | 0.69 | 0.784719 |
Target: 5'- cAGGCGGCagagcaCGauGCGCGCGCGGucGCGGUc -3' miRNA: 3'- -UUCGCCGa-----GC--UGUGCGUGCU--UGCCAc -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 185178 | 0.69 | 0.793689 |
Target: 5'- -cGCGGCgcggUCGGCGCGguCGGcGCGGUc -3' miRNA: 3'- uuCGCCG----AGCUGUGCguGCU-UGCCAc -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 130342 | 0.68 | 0.811198 |
Target: 5'- aAGGCGGCgaCGACgACGCcgACGAcgACGGUc -3' miRNA: 3'- -UUCGCCGa-GCUG-UGCG--UGCU--UGCCAc -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 178798 | 0.68 | 0.811198 |
Target: 5'- aAGGCGGCUCGGCcCGgGgGGACcGGg- -3' miRNA: 3'- -UUCGCCGAGCUGuGCgUgCUUG-CCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 181733 | 0.68 | 0.819721 |
Target: 5'- -cGCGGa---ACACGCGCGAGCGGc- -3' miRNA: 3'- uuCGCCgagcUGUGCGUGCUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 37488 | 0.68 | 0.819721 |
Target: 5'- -uGCGGCgCGACcagcCGCACGcGCGuGUGg -3' miRNA: 3'- uuCGCCGaGCUGu---GCGUGCuUGC-CAC- -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 69491 | 0.68 | 0.819721 |
Target: 5'- cAAGaUGGCUCGcaccACGCGCACGGucaGGUa -3' miRNA: 3'- -UUC-GCCGAGC----UGUGCGUGCUug-CCAc -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 145324 | 0.68 | 0.819721 |
Target: 5'- -cGCGGCgggCGGCGCucggGCcCGAGCGGg- -3' miRNA: 3'- uuCGCCGa--GCUGUG----CGuGCUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 79955 | 0.68 | 0.828079 |
Target: 5'- -uGCGaGCUCGugGCGUACGAccccCGGc- -3' miRNA: 3'- uuCGC-CGAGCugUGCGUGCUu---GCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 156553 | 0.68 | 0.828079 |
Target: 5'- -cGUGGaUUCGGCACGCGCcugucugaGAGCGGa- -3' miRNA: 3'- uuCGCC-GAGCUGUGCGUG--------CUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 38651 | 0.68 | 0.836266 |
Target: 5'- cGGaGGCUCGACuauuugacucccGCGCGCGAcccGCGGa- -3' miRNA: 3'- uUCgCCGAGCUG------------UGCGUGCU---UGCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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