Results 21 - 40 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11134 | 3' | -56.9 | NC_002794.1 | + | 44386 | 0.66 | 0.894787 |
Target: 5'- -cGCGacGCUCGACGCGCcCGuucCGGUc -3' miRNA: 3'- uuCGC--CGAGCUGUGCGuGCuu-GCCAc -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 15282 | 0.66 | 0.894787 |
Target: 5'- -cGCGGCUCccuC-CGCGCGAGCGa-- -3' miRNA: 3'- uuCGCCGAGcu-GuGCGUGCUUGCcac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 286 | 0.66 | 0.888202 |
Target: 5'- cGGCGGCccUGGCGCGC-CGAACGc-- -3' miRNA: 3'- uUCGCCGa-GCUGUGCGuGCUUGCcac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 127363 | 0.66 | 0.888202 |
Target: 5'- cGGCGGCgCGGC-CGCucgugucgGCGGACGGc- -3' miRNA: 3'- uUCGCCGaGCUGuGCG--------UGCUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 120051 | 0.66 | 0.888202 |
Target: 5'- cGGCGGCgguggCGGC-CGCGgaggcCGAcgcgGCGGUGg -3' miRNA: 3'- uUCGCCGa----GCUGuGCGU-----GCU----UGCCAC- -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 41291 | 0.66 | 0.888202 |
Target: 5'- cGGCGGCUcCGACGCGgGCcgcGugGGg- -3' miRNA: 3'- uUCGCCGA-GCUGUGCgUGc--UugCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 182295 | 0.66 | 0.888202 |
Target: 5'- gGGGCGGgUgGACGgGCagACGGGCGGa- -3' miRNA: 3'- -UUCGCCgAgCUGUgCG--UGCUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 91209 | 0.66 | 0.888202 |
Target: 5'- -cGCGGacggCGACGCGacgGCGGACGGc- -3' miRNA: 3'- uuCGCCga--GCUGUGCg--UGCUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 30749 | 0.67 | 0.881398 |
Target: 5'- -cGCGGCU-GGCGCGCugGAGgaucUGGa- -3' miRNA: 3'- uuCGCCGAgCUGUGCGugCUU----GCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 180871 | 0.67 | 0.881398 |
Target: 5'- gAGGCGGCggaucCGGCGCGCcCGGucucggccGCGGa- -3' miRNA: 3'- -UUCGCCGa----GCUGUGCGuGCU--------UGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 107538 | 0.67 | 0.881398 |
Target: 5'- -cGCGGCgcCGGCG-GCgACGAccGCGGUGg -3' miRNA: 3'- uuCGCCGa-GCUGUgCG-UGCU--UGCCAC- -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 94481 | 0.67 | 0.881398 |
Target: 5'- cGGCGGCg-GACGCGgcCGCGGGCcGUGg -3' miRNA: 3'- uUCGCCGagCUGUGC--GUGCUUGcCAC- -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 51276 | 0.67 | 0.881398 |
Target: 5'- gAGGCaGGCgCGGCcCGCcCGAACGGg- -3' miRNA: 3'- -UUCG-CCGaGCUGuGCGuGCUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 149289 | 0.67 | 0.881398 |
Target: 5'- cGGCGGCUCGcuCACGgG-GGGCGGg- -3' miRNA: 3'- uUCGCCGAGCu-GUGCgUgCUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 187465 | 0.67 | 0.881398 |
Target: 5'- cGGCGucGCUCGGCGCGCGcCGGGCcgaGGa- -3' miRNA: 3'- uUCGC--CGAGCUGUGCGU-GCUUG---CCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 95817 | 0.67 | 0.874381 |
Target: 5'- gGAGCGGCggCGGC-CGgGgGAGCGGc- -3' miRNA: 3'- -UUCGCCGa-GCUGuGCgUgCUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 113146 | 0.67 | 0.874381 |
Target: 5'- aGGGCGGgCgCGucagcguguaGCGCGCGCGGGCGGc- -3' miRNA: 3'- -UUCGCC-GaGC----------UGUGCGUGCUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 97423 | 0.67 | 0.874381 |
Target: 5'- aGAGCGGCaacaCGAgGCGCuACGucACGGUu -3' miRNA: 3'- -UUCGCCGa---GCUgUGCG-UGCu-UGCCAc -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 111171 | 0.67 | 0.874381 |
Target: 5'- -cGCGGUgcagGGCGCGCACGAACu--- -3' miRNA: 3'- uuCGCCGag--CUGUGCGUGCUUGccac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 53770 | 0.67 | 0.874381 |
Target: 5'- cGGCGGCgggacgcccgCGACGCGCcCG-GCGGg- -3' miRNA: 3'- uUCGCCGa---------GCUGUGCGuGCuUGCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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