miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 3' -56.9 NC_002794.1 + 111171 0.67 0.874381
Target:  5'- -cGCGGUgcagGGCGCGCACGAACu--- -3'
miRNA:   3'- uuCGCCGag--CUGUGCGUGCUUGccac -5'
11134 3' -56.9 NC_002794.1 + 97423 0.67 0.874381
Target:  5'- aGAGCGGCaacaCGAgGCGCuACGucACGGUu -3'
miRNA:   3'- -UUCGCCGa---GCUgUGCG-UGCu-UGCCAc -5'
11134 3' -56.9 NC_002794.1 + 113146 0.67 0.874381
Target:  5'- aGGGCGGgCgCGucagcguguaGCGCGCGCGGGCGGc- -3'
miRNA:   3'- -UUCGCC-GaGC----------UGUGCGUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 107224 0.67 0.874381
Target:  5'- cGGGCGGCgcgCGACGgGgGCGGcgucGCGGa- -3'
miRNA:   3'- -UUCGCCGa--GCUGUgCgUGCU----UGCCac -5'
11134 3' -56.9 NC_002794.1 + 106948 0.67 0.873667
Target:  5'- cGGCGGCgccuggaGACACGCgucgccucgcgcgGCGGccggcacgGCGGUGg -3'
miRNA:   3'- uUCGCCGag-----CUGUGCG-------------UGCU--------UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 142405 0.67 0.867154
Target:  5'- cAGGCGGCgUCGGCGgCGC-CGGGCGcGa- -3'
miRNA:   3'- -UUCGCCG-AGCUGU-GCGuGCUUGC-Cac -5'
11134 3' -56.9 NC_002794.1 + 112481 0.67 0.867154
Target:  5'- gGAGCuGCUCGuagcgcucCACGUaccGCGAGCGGUc -3'
miRNA:   3'- -UUCGcCGAGCu-------GUGCG---UGCUUGCCAc -5'
11134 3' -56.9 NC_002794.1 + 46316 0.67 0.86642
Target:  5'- -cGCGGCggCGACgGCGCcgucgccGCGGACGGc- -3'
miRNA:   3'- uuCGCCGa-GCUG-UGCG-------UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 100057 0.67 0.859723
Target:  5'- --cCGGCUcagCGACACGCugGAGCuGGc- -3'
miRNA:   3'- uucGCCGA---GCUGUGCGugCUUG-CCac -5'
11134 3' -56.9 NC_002794.1 + 91757 0.67 0.859723
Target:  5'- cGGCGGg-CGGCAcCGCGCaGGACGGg- -3'
miRNA:   3'- uUCGCCgaGCUGU-GCGUG-CUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 178291 0.67 0.859723
Target:  5'- cGAGCgacGGCUCGACGCGggagGCGAACGc-- -3'
miRNA:   3'- -UUCG---CCGAGCUGUGCg---UGCUUGCcac -5'
11134 3' -56.9 NC_002794.1 + 115845 0.67 0.859723
Target:  5'- cGGCgGGCUCgGGCcugggACGCGCGAGgGGUc -3'
miRNA:   3'- uUCG-CCGAG-CUG-----UGCGUGCUUgCCAc -5'
11134 3' -56.9 NC_002794.1 + 189645 0.67 0.858969
Target:  5'- uGGCuGGCUgacuagcCGGCugGC-CGAGCGGUc -3'
miRNA:   3'- uUCG-CCGA-------GCUGugCGuGCUUGCCAc -5'
11134 3' -56.9 NC_002794.1 + 138687 0.67 0.852094
Target:  5'- cGGCGGgUCGugAUGCAaaugaGGGCGGc- -3'
miRNA:   3'- uUCGCCgAGCugUGCGUg----CUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 73319 0.67 0.852094
Target:  5'- cGGCGacgcguaccuGCUCGuCACGgACGGACGGa- -3'
miRNA:   3'- uUCGC----------CGAGCuGUGCgUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 54240 0.68 0.844273
Target:  5'- gAAGCGGC-CGA-GCGCGCGGuccACGGc- -3'
miRNA:   3'- -UUCGCCGaGCUgUGCGUGCU---UGCCac -5'
11134 3' -56.9 NC_002794.1 + 82445 0.68 0.844273
Target:  5'- -cGCGGCUCGGCACGguCGGccCGa-- -3'
miRNA:   3'- uuCGCCGAGCUGUGCguGCUu-GCcac -5'
11134 3' -56.9 NC_002794.1 + 120105 0.68 0.836266
Target:  5'- cGAGCGcGCcgcgCGugACGCGCGcGACGGc- -3'
miRNA:   3'- -UUCGC-CGa---GCugUGCGUGC-UUGCCac -5'
11134 3' -56.9 NC_002794.1 + 38651 0.68 0.836266
Target:  5'- cGGaGGCUCGACuauuugacucccGCGCGCGAcccGCGGa- -3'
miRNA:   3'- uUCgCCGAGCUG------------UGCGUGCU---UGCCac -5'
11134 3' -56.9 NC_002794.1 + 98905 0.68 0.836266
Target:  5'- -cGCGGuCUCGACGacuuCAUGAGCGGg- -3'
miRNA:   3'- uuCGCC-GAGCUGUgc--GUGCUUGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.