miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 3' -56.9 NC_002794.1 + 44428 0.7 0.727456
Target:  5'- cGAGCGGCUCGACGacaccggcgcgccCGCcCGGACGu-- -3'
miRNA:   3'- -UUCGCCGAGCUGU-------------GCGuGCUUGCcac -5'
11134 3' -56.9 NC_002794.1 + 46316 0.67 0.86642
Target:  5'- -cGCGGCggCGACgGCGCcgucgccGCGGACGGc- -3'
miRNA:   3'- uuCGCCGa-GCUG-UGCG-------UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 50767 0.69 0.766392
Target:  5'- cGGGCGGCggCGACgGCGCGucuCGGGCGGc- -3'
miRNA:   3'- -UUCGCCGa-GCUG-UGCGU---GCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 51276 0.67 0.881398
Target:  5'- gAGGCaGGCgCGGCcCGCcCGAACGGg- -3'
miRNA:   3'- -UUCG-CCGaGCUGuGCGuGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 53770 0.67 0.874381
Target:  5'- cGGCGGCgggacgcccgCGACGCGCcCG-GCGGg- -3'
miRNA:   3'- uUCGCCGa---------GCUGUGCGuGCuUGCCac -5'
11134 3' -56.9 NC_002794.1 + 54240 0.68 0.844273
Target:  5'- gAAGCGGC-CGA-GCGCGCGGuccACGGc- -3'
miRNA:   3'- -UUCGCCGaGCUgUGCGUGCU---UGCCac -5'
11134 3' -56.9 NC_002794.1 + 55304 0.77 0.346254
Target:  5'- cGGCGGCgucgCGGCGgGCGCGGGCGGc- -3'
miRNA:   3'- uUCGCCGa---GCUGUgCGUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 56284 0.69 0.784719
Target:  5'- cAGGCGGCagagcaCGauGCGCGCGCGGucGCGGUc -3'
miRNA:   3'- -UUCGCCGa-----GC--UGUGCGUGCU--UGCCAc -5'
11134 3' -56.9 NC_002794.1 + 57472 0.69 0.775618
Target:  5'- -uGCGcccGCUCGuCACGCGCGAccaGGUGc -3'
miRNA:   3'- uuCGC---CGAGCuGUGCGUGCUug-CCAC- -5'
11134 3' -56.9 NC_002794.1 + 59195 0.72 0.619028
Target:  5'- uGGCGG-UCGACGCGCACGu-CGGc- -3'
miRNA:   3'- uUCGCCgAGCUGUGCGUGCuuGCCac -5'
11134 3' -56.9 NC_002794.1 + 62080 0.74 0.46926
Target:  5'- cGGCGGCgacgacggcgacgCGGCGCGC-CGGACGGUc -3'
miRNA:   3'- uUCGCCGa------------GCUGUGCGuGCUUGCCAc -5'
11134 3' -56.9 NC_002794.1 + 62436 0.7 0.699074
Target:  5'- cGAGCGucCUCGACACGCACG-GCGaGUu -3'
miRNA:   3'- -UUCGCc-GAGCUGUGCGUGCuUGC-CAc -5'
11134 3' -56.9 NC_002794.1 + 64800 0.74 0.510534
Target:  5'- -cGCGGCgagCGACGC-CGCGGACGGc- -3'
miRNA:   3'- uuCGCCGa--GCUGUGcGUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 65249 0.66 0.901152
Target:  5'- cGGCGGCgaucCGGCcuCGC-CGAGCGGc- -3'
miRNA:   3'- uUCGCCGa---GCUGu-GCGuGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 66742 0.69 0.775618
Target:  5'- cGGUGGCggCGGCGCGUACGAcCGcUGg -3'
miRNA:   3'- uUCGCCGa-GCUGUGCGUGCUuGCcAC- -5'
11134 3' -56.9 NC_002794.1 + 68313 0.69 0.747603
Target:  5'- uGGCGGC-CGACGCGUuccGCGGccUGGUGa -3'
miRNA:   3'- uUCGCCGaGCUGUGCG---UGCUu-GCCAC- -5'
11134 3' -56.9 NC_002794.1 + 69491 0.68 0.819721
Target:  5'- cAAGaUGGCUCGcaccACGCGCACGGucaGGUa -3'
miRNA:   3'- -UUC-GCCGAGC----UGUGCGUGCUug-CCAc -5'
11134 3' -56.9 NC_002794.1 + 73319 0.67 0.852094
Target:  5'- cGGCGacgcguaccuGCUCGuCACGgACGGACGGa- -3'
miRNA:   3'- uUCGC----------CGAGCuGUGCgUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 79955 0.68 0.828079
Target:  5'- -uGCGaGCUCGugGCGUACGAccccCGGc- -3'
miRNA:   3'- uuCGC-CGAGCugUGCGUGCUu---GCCac -5'
11134 3' -56.9 NC_002794.1 + 82445 0.68 0.844273
Target:  5'- -cGCGGCUCGGCACGguCGGccCGa-- -3'
miRNA:   3'- uuCGCCGAGCUGUGCguGCUu-GCcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.