miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 3' -56.9 NC_002794.1 + 106948 0.67 0.873667
Target:  5'- cGGCGGCgccuggaGACACGCgucgccucgcgcgGCGGccggcacgGCGGUGg -3'
miRNA:   3'- uUCGCCGag-----CUGUGCG-------------UGCU--------UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 107068 0.66 0.918888
Target:  5'- -cGCGGCgccgcCGGCAUGUcggagccgACGGGCGGg- -3'
miRNA:   3'- uuCGCCGa----GCUGUGCG--------UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 107224 0.67 0.874381
Target:  5'- cGGGCGGCgcgCGACGgGgGCGGcgucGCGGa- -3'
miRNA:   3'- -UUCGCCGa--GCUGUgCgUGCU----UGCCac -5'
11134 3' -56.9 NC_002794.1 + 107538 0.67 0.881398
Target:  5'- -cGCGGCgcCGGCG-GCgACGAccGCGGUGg -3'
miRNA:   3'- uuCGCCGa-GCUGUgCG-UGCU--UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 111171 0.67 0.874381
Target:  5'- -cGCGGUgcagGGCGCGCACGAACu--- -3'
miRNA:   3'- uuCGCCGag--CUGUGCGUGCUUGccac -5'
11134 3' -56.9 NC_002794.1 + 112363 0.69 0.783815
Target:  5'- gGGGCGGggagcugcuggaaCUCGGCACGCA-GGGCGGc- -3'
miRNA:   3'- -UUCGCC-------------GAGCUGUGCGUgCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 112481 0.67 0.867154
Target:  5'- gGAGCuGCUCGuagcgcucCACGUaccGCGAGCGGUc -3'
miRNA:   3'- -UUCGcCGAGCu-------GUGCG---UGCUUGCCAc -5'
11134 3' -56.9 NC_002794.1 + 113146 0.67 0.874381
Target:  5'- aGGGCGGgCgCGucagcguguaGCGCGCGCGGGCGGc- -3'
miRNA:   3'- -UUCGCC-GaGC----------UGUGCGUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 113873 0.72 0.608985
Target:  5'- cAGGCGcGCUCGGCcgcgGCGCGCGucggcGCGGUc -3'
miRNA:   3'- -UUCGC-CGAGCUG----UGCGUGCu----UGCCAc -5'
11134 3' -56.9 NC_002794.1 + 115845 0.67 0.859723
Target:  5'- cGGCgGGCUCgGGCcugggACGCGCGAGgGGUc -3'
miRNA:   3'- uUCG-CCGAG-CUG-----UGCGUGCUUgCCAc -5'
11134 3' -56.9 NC_002794.1 + 116016 0.66 0.907291
Target:  5'- -cGCGGUggCGAUugGCGCGGGgacCGGa- -3'
miRNA:   3'- uuCGCCGa-GCUGugCGUGCUU---GCCac -5'
11134 3' -56.9 NC_002794.1 + 116953 0.76 0.377581
Target:  5'- cGGCGGCgUCGGCggGCGCAgGAACGGg- -3'
miRNA:   3'- uUCGCCG-AGCUG--UGCGUgCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 120051 0.66 0.888202
Target:  5'- cGGCGGCgguggCGGC-CGCGgaggcCGAcgcgGCGGUGg -3'
miRNA:   3'- uUCGCCGa----GCUGuGCGU-----GCU----UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 120105 0.68 0.836266
Target:  5'- cGAGCGcGCcgcgCGugACGCGCGcGACGGc- -3'
miRNA:   3'- -UUCGC-CGa---GCugUGCGUGC-UUGCCac -5'
11134 3' -56.9 NC_002794.1 + 120190 0.7 0.699074
Target:  5'- cAAGCGGUUCaa-GgGCACGAGCGGg- -3'
miRNA:   3'- -UUCGCCGAGcugUgCGUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 120813 0.72 0.619028
Target:  5'- gGAGCGGCagcugCGACACGCucuCG-ACGGg- -3'
miRNA:   3'- -UUCGCCGa----GCUGUGCGu--GCuUGCCac -5'
11134 3' -56.9 NC_002794.1 + 125647 0.72 0.588956
Target:  5'- uAGCGGCguucugccUCGGCGCGC-UGAACGGg- -3'
miRNA:   3'- uUCGCCG--------AGCUGUGCGuGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 126241 0.71 0.669236
Target:  5'- -cGUGGCgaUCGugGCGCGCGAggucgGCGGcUGg -3'
miRNA:   3'- uuCGCCG--AGCugUGCGUGCU-----UGCC-AC- -5'
11134 3' -56.9 NC_002794.1 + 126276 0.66 0.907893
Target:  5'- uGGCGGCgcugggcuugcugugCGcCGCGCGCcuGGCGGUGc -3'
miRNA:   3'- uUCGCCGa--------------GCuGUGCGUGc-UUGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 127363 0.66 0.888202
Target:  5'- cGGCGGCgCGGC-CGCucgugucgGCGGACGGc- -3'
miRNA:   3'- uUCGCCGaGCUGuGCG--------UGCUUGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.