miRNA display CGI


Results 81 - 100 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 3' -56.9 NC_002794.1 + 128161 0.76 0.377581
Target:  5'- cGGCGGCUCG-CGC-CGCGGACGGg- -3'
miRNA:   3'- uUCGCCGAGCuGUGcGUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 129049 0.75 0.436799
Target:  5'- -uGCGG-UCGugGCGCGCG-ACGGUGu -3'
miRNA:   3'- uuCGCCgAGCugUGCGUGCuUGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 129081 0.67 0.874381
Target:  5'- uGGCGGCg-GAC-CGUcCGGugGGUGg -3'
miRNA:   3'- uUCGCCGagCUGuGCGuGCUugCCAC- -5'
11134 3' -56.9 NC_002794.1 + 129208 0.72 0.578984
Target:  5'- cGAGCGGC-CGACggcgguggauAgGCGCGAACGGg- -3'
miRNA:   3'- -UUCGCCGaGCUG----------UgCGUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 130342 0.68 0.811198
Target:  5'- aAGGCGGCgaCGACgACGCcgACGAcgACGGUc -3'
miRNA:   3'- -UUCGCCGa-GCUG-UGCG--UGCU--UGCCAc -5'
11134 3' -56.9 NC_002794.1 + 130551 0.66 0.913204
Target:  5'- -cGCGGCgUCGcCGCGCACGuguUGGc- -3'
miRNA:   3'- uuCGCCG-AGCuGUGCGUGCuu-GCCac -5'
11134 3' -56.9 NC_002794.1 + 131883 0.66 0.907291
Target:  5'- -cGCGGCcucaucUCGGuCGCGCGCGGGCacGUGu -3'
miRNA:   3'- uuCGCCG------AGCU-GUGCGUGCUUGc-CAC- -5'
11134 3' -56.9 NC_002794.1 + 137760 0.72 0.598959
Target:  5'- cGGCGGCUCGAagaGCAgGAugGGg- -3'
miRNA:   3'- uUCGCCGAGCUgugCGUgCUugCCac -5'
11134 3' -56.9 NC_002794.1 + 138296 0.66 0.918888
Target:  5'- uGGCGGcCUUGGCcCGCACGcuguCGGg- -3'
miRNA:   3'- uUCGCC-GAGCUGuGCGUGCuu--GCCac -5'
11134 3' -56.9 NC_002794.1 + 138687 0.67 0.852094
Target:  5'- cGGCGGgUCGugAUGCAaaugaGGGCGGc- -3'
miRNA:   3'- uUCGCCgAGCugUGCGUg----CUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 138956 0.7 0.708923
Target:  5'- uGGCGuGCUgCGACGCG-GCGGACGGg- -3'
miRNA:   3'- uUCGC-CGA-GCUGUGCgUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 140106 0.72 0.62908
Target:  5'- cGGCGGCgaUCGACgGCGguCG-ACGGUGg -3'
miRNA:   3'- uUCGCCG--AGCUG-UGCguGCuUGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 141605 0.66 0.912623
Target:  5'- cGGGCGGCUCGGCGaccggcuCGCggucuaGCG-ACGGg- -3'
miRNA:   3'- -UUCGCCGAGCUGU-------GCG------UGCuUGCCac -5'
11134 3' -56.9 NC_002794.1 + 142234 0.66 0.907291
Target:  5'- gGAGCGGCggaggCGGCG-GUgagACGGACGGg- -3'
miRNA:   3'- -UUCGCCGa----GCUGUgCG---UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 142405 0.67 0.867154
Target:  5'- cAGGCGGCgUCGGCGgCGC-CGGGCGcGa- -3'
miRNA:   3'- -UUCGCCG-AGCUGU-GCGuGCUUGC-Cac -5'
11134 3' -56.9 NC_002794.1 + 144272 0.74 0.501013
Target:  5'- aAGGCGGUcuUCGACACGCucaaGAAccCGGUGg -3'
miRNA:   3'- -UUCGCCG--AGCUGUGCGug--CUU--GCCAC- -5'
11134 3' -56.9 NC_002794.1 + 145324 0.68 0.819721
Target:  5'- -cGCGGCgggCGGCGCucggGCcCGAGCGGg- -3'
miRNA:   3'- uuCGCCGa--GCUGUG----CGuGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 145892 0.69 0.756111
Target:  5'- gAAGCGGCgagcgCGACgggggagucgaccGCGC-CGAGCGGa- -3'
miRNA:   3'- -UUCGCCGa----GCUG-------------UGCGuGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 148647 0.71 0.689171
Target:  5'- cGGCGuGCUCGGCuACGCGCcgaccgagGAGCGGa- -3'
miRNA:   3'- uUCGC-CGAGCUG-UGCGUG--------CUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 149289 0.67 0.881398
Target:  5'- cGGCGGCUCGcuCACGgG-GGGCGGg- -3'
miRNA:   3'- uUCGCCGAGCu-GUGCgUgCUUGCCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.