Results 101 - 119 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11134 | 3' | -56.9 | NC_002794.1 | + | 149749 | 0.71 | 0.649184 |
Target: 5'- gGAGCGGCgggaccgcugucUCGGCcuguuggagcggGCGUACGggUGGUGc -3' miRNA: 3'- -UUCGCCG------------AGCUG------------UGCGUGCuuGCCAC- -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 153683 | 0.7 | 0.699074 |
Target: 5'- ---aGGCUCGACGCGCgaccgGCGAcCGGUu -3' miRNA: 3'- uucgCCGAGCUGUGCG-----UGCUuGCCAc -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 156398 | 0.69 | 0.766392 |
Target: 5'- aGAGCGGC-CGGCGC-CGCGGccGCGGc- -3' miRNA: 3'- -UUCGCCGaGCUGUGcGUGCU--UGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 156553 | 0.68 | 0.828079 |
Target: 5'- -cGUGGaUUCGGCACGCGCcugucugaGAGCGGa- -3' miRNA: 3'- uuCGCC-GAGCUGUGCGUG--------CUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 178291 | 0.67 | 0.859723 |
Target: 5'- cGAGCgacGGCUCGACGCGggagGCGAACGc-- -3' miRNA: 3'- -UUCG---CCGAGCUGUGCg---UGCUUGCcac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 178798 | 0.68 | 0.811198 |
Target: 5'- aAGGCGGCUCGGCcCGgGgGGACcGGg- -3' miRNA: 3'- -UUCGCCGAGCUGuGCgUgCUUG-CCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 179657 | 0.66 | 0.912623 |
Target: 5'- cAGGCgGGCUCGccggacgGCACcCGCGGcggcgACGGUGg -3' miRNA: 3'- -UUCG-CCGAGC-------UGUGcGUGCU-----UGCCAC- -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 180759 | 0.72 | 0.619028 |
Target: 5'- cGGCGGCuUCGGCG-GCAacugucCGGGCGGUGg -3' miRNA: 3'- uUCGCCG-AGCUGUgCGU------GCUUGCCAC- -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 180871 | 0.67 | 0.881398 |
Target: 5'- gAGGCGGCggaucCGGCGCGCcCGGucucggccGCGGa- -3' miRNA: 3'- -UUCGCCGa----GCUGUGCGuGCU--------UGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 181733 | 0.68 | 0.819721 |
Target: 5'- -cGCGGa---ACACGCGCGAGCGGc- -3' miRNA: 3'- uuCGCCgagcUGUGCGUGCUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 182295 | 0.66 | 0.888202 |
Target: 5'- gGGGCGGgUgGACGgGCagACGGGCGGa- -3' miRNA: 3'- -UUCGCCgAgCUGUgCG--UGCUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 184063 | 0.78 | 0.289337 |
Target: 5'- -cGCGGCgaagCGGCACGCGCccACGGUGu -3' miRNA: 3'- uuCGCCGa---GCUGUGCGUGcuUGCCAC- -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 184505 | 0.69 | 0.775618 |
Target: 5'- cGGGCGGCgCGGgcccCGCGCGCGGcGCGGg- -3' miRNA: 3'- -UUCGCCGaGCU----GUGCGUGCU-UGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 184581 | 0.74 | 0.501013 |
Target: 5'- cGGCGGCggCGGcCACGCGCGGccGCGGg- -3' miRNA: 3'- uUCGCCGa-GCU-GUGCGUGCU--UGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 185178 | 0.69 | 0.793689 |
Target: 5'- -cGCGGCgcggUCGGCGCGguCGGcGCGGUc -3' miRNA: 3'- uuCGCCG----AGCUGUGCguGCU-UGCCAc -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 187465 | 0.67 | 0.881398 |
Target: 5'- cGGCGucGCUCGGCGCGCGcCGGGCcgaGGa- -3' miRNA: 3'- uUCGC--CGAGCUGUGCGU-GCUUG---CCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 187827 | 0.66 | 0.907291 |
Target: 5'- gGAGCGcGCUCGGCucgGCGCGCcGAgGGc- -3' miRNA: 3'- -UUCGC-CGAGCUG---UGCGUGcUUgCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 189645 | 0.67 | 0.858969 |
Target: 5'- uGGCuGGCUgacuagcCGGCugGC-CGAGCGGUc -3' miRNA: 3'- uUCG-CCGA-------GCUGugCGuGCUUGCCAc -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 194775 | 0.71 | 0.669236 |
Target: 5'- cGAGaaCGGC-CGGCACGCGCGcAGCGGc- -3' miRNA: 3'- -UUC--GCCGaGCUGUGCGUGC-UUGCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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