miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 3' -56.9 NC_002794.1 + 105939 0.7 0.708923
Target:  5'- ---gGGCUgGACGCGCuguACGAACGGcUGg -3'
miRNA:   3'- uucgCCGAgCUGUGCG---UGCUUGCC-AC- -5'
11134 3' -56.9 NC_002794.1 + 105549 0.66 0.901152
Target:  5'- cGGCGGCUCGG-GCGaACGGAUagGGUGc -3'
miRNA:   3'- uUCGCCGAGCUgUGCgUGCUUG--CCAC- -5'
11134 3' -56.9 NC_002794.1 + 104777 0.69 0.757051
Target:  5'- cGGC-GCUcCGACACGC-CGAcagGCGGUGc -3'
miRNA:   3'- uUCGcCGA-GCUGUGCGuGCU---UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 102510 0.7 0.708923
Target:  5'- cAGCGGCU-GGCGCGCGC--GCGGg- -3'
miRNA:   3'- uUCGCCGAgCUGUGCGUGcuUGCCac -5'
11134 3' -56.9 NC_002794.1 + 101507 0.66 0.907291
Target:  5'- cGAGCGGUgCGGCACaCGCcGGCGGg- -3'
miRNA:   3'- -UUCGCCGaGCUGUGcGUGcUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 100057 0.67 0.859723
Target:  5'- --cCGGCUcagCGACACGCugGAGCuGGc- -3'
miRNA:   3'- uucGCCGA---GCUGUGCGugCUUG-CCac -5'
11134 3' -56.9 NC_002794.1 + 99596 0.67 0.874381
Target:  5'- -cGCGGCggCGGCGCGCGCucGCGc-- -3'
miRNA:   3'- uuCGCCGa-GCUGUGCGUGcuUGCcac -5'
11134 3' -56.9 NC_002794.1 + 98905 0.68 0.836266
Target:  5'- -cGCGGuCUCGACGacuuCAUGAGCGGg- -3'
miRNA:   3'- uuCGCC-GAGCUGUgc--GUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 97423 0.67 0.874381
Target:  5'- aGAGCGGCaacaCGAgGCGCuACGucACGGUu -3'
miRNA:   3'- -UUCGCCGa---GCUgUGCG-UGCu-UGCCAc -5'
11134 3' -56.9 NC_002794.1 + 95817 0.67 0.874381
Target:  5'- gGAGCGGCggCGGC-CGgGgGAGCGGc- -3'
miRNA:   3'- -UUCGCCGa-GCUGuGCgUgCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 94481 0.67 0.881398
Target:  5'- cGGCGGCg-GACGCGgcCGCGGGCcGUGg -3'
miRNA:   3'- uUCGCCGagCUGUGC--GUGCUUGcCAC- -5'
11134 3' -56.9 NC_002794.1 + 94298 0.69 0.775618
Target:  5'- gGGGCGGCUCgGGCGCGC-CGAugcaaGGa- -3'
miRNA:   3'- -UUCGCCGAG-CUGUGCGuGCUug---CCac -5'
11134 3' -56.9 NC_002794.1 + 94219 0.69 0.775618
Target:  5'- cGGUGGCggCGACggGCGgGCGGGcCGGUGa -3'
miRNA:   3'- uUCGCCGa-GCUG--UGCgUGCUU-GCCAC- -5'
11134 3' -56.9 NC_002794.1 + 92339 0.66 0.907291
Target:  5'- cGGGCGGCUCGGCgucaACGU-CGAcCGGc- -3'
miRNA:   3'- -UUCGCCGAGCUG----UGCGuGCUuGCCac -5'
11134 3' -56.9 NC_002794.1 + 91880 0.66 0.918888
Target:  5'- uGGCGGCggCGGC-CGCgACGAGCaGUu -3'
miRNA:   3'- uUCGCCGa-GCUGuGCG-UGCUUGcCAc -5'
11134 3' -56.9 NC_002794.1 + 91757 0.67 0.859723
Target:  5'- cGGCGGg-CGGCAcCGCGCaGGACGGg- -3'
miRNA:   3'- uUCGCCgaGCUGU-GCGUG-CUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 91209 0.66 0.888202
Target:  5'- -cGCGGacggCGACGCGacgGCGGACGGc- -3'
miRNA:   3'- uuCGCCga--GCUGUGCg--UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 90088 0.79 0.263748
Target:  5'- -uGUGGCUCGGCACGCucuGCGccGCGGUGg -3'
miRNA:   3'- uuCGCCGAGCUGUGCG---UGCu-UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 82653 0.69 0.775618
Target:  5'- gAAGCGccgcGCUCGACGcCGCGCcGGCGGa- -3'
miRNA:   3'- -UUCGC----CGAGCUGU-GCGUGcUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 82445 0.68 0.844273
Target:  5'- -cGCGGCUCGGCACGguCGGccCGa-- -3'
miRNA:   3'- uuCGCCGAGCUGUGCguGCUu-GCcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.