miRNA display CGI


Results 101 - 119 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 3' -56.9 NC_002794.1 + 44259 0.74 0.482214
Target:  5'- cGGGCGGCUCGGC-CGCcGgGGACGGa- -3'
miRNA:   3'- -UUCGCCGAGCUGuGCG-UgCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 41291 0.66 0.888202
Target:  5'- cGGCGGCUcCGACGCGgGCcgcGugGGg- -3'
miRNA:   3'- uUCGCCGA-GCUGUGCgUGc--UugCCac -5'
11134 3' -56.9 NC_002794.1 + 38651 0.68 0.836266
Target:  5'- cGGaGGCUCGACuauuugacucccGCGCGCGAcccGCGGa- -3'
miRNA:   3'- uUCgCCGAGCUG------------UGCGUGCU---UGCCac -5'
11134 3' -56.9 NC_002794.1 + 38463 0.7 0.718709
Target:  5'- -cGCGGCcgCGGCGCGCccuuuAUGGGCGGa- -3'
miRNA:   3'- uuCGCCGa-GCUGUGCG-----UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 37966 0.67 0.874381
Target:  5'- cGGCGGCUCGugGuacgaGC-CGAucGCGGUc -3'
miRNA:   3'- uUCGCCGAGCugUg----CGuGCU--UGCCAc -5'
11134 3' -56.9 NC_002794.1 + 37751 0.7 0.738058
Target:  5'- cGGCGGCgcggCGGCGCcgGCGgGAGCGGc- -3'
miRNA:   3'- uUCGCCGa---GCUGUG--CGUgCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 37488 0.68 0.819721
Target:  5'- -uGCGGCgCGACcagcCGCACGcGCGuGUGg -3'
miRNA:   3'- uuCGCCGaGCUGu---GCGUGCuUGC-CAC- -5'
11134 3' -56.9 NC_002794.1 + 37286 0.66 0.900525
Target:  5'- -cGCGGCguacaaCGACACGUaggggaacGCGGggcagaagacggaGCGGUGg -3'
miRNA:   3'- uuCGCCGa-----GCUGUGCG--------UGCU-------------UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 35553 0.71 0.669236
Target:  5'- cGGC-GCUCG-CGCGCGCGcgUGGUGg -3'
miRNA:   3'- uUCGcCGAGCuGUGCGUGCuuGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 34734 0.74 0.501013
Target:  5'- cGGGCGGC-CGcagaGCGCGCGAcggcGCGGUGg -3'
miRNA:   3'- -UUCGCCGaGCug--UGCGUGCU----UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 32567 0.66 0.913204
Target:  5'- -cGCGGauaGuCGCGCGCG-GCGGUGc -3'
miRNA:   3'- uuCGCCgagCuGUGCGUGCuUGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 30749 0.67 0.881398
Target:  5'- -cGCGGCU-GGCGCGCugGAGgaucUGGa- -3'
miRNA:   3'- uuCGCCGAgCUGUGCGugCUU----GCCac -5'
11134 3' -56.9 NC_002794.1 + 29091 0.7 0.738058
Target:  5'- -uGCGGCUCGGCucgucguCGuCACGAGCGa-- -3'
miRNA:   3'- uuCGCCGAGCUGu------GC-GUGCUUGCcac -5'
11134 3' -56.9 NC_002794.1 + 25129 0.7 0.728424
Target:  5'- cGAGCGG---GGCACGCGCGcACGGUa -3'
miRNA:   3'- -UUCGCCgagCUGUGCGUGCuUGCCAc -5'
11134 3' -56.9 NC_002794.1 + 21451 0.66 0.901152
Target:  5'- -cGCGucGCUCGGCGuCGCcgugACGGcaACGGUGg -3'
miRNA:   3'- uuCGC--CGAGCUGU-GCG----UGCU--UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 15282 0.66 0.894787
Target:  5'- -cGCGGCUCccuC-CGCGCGAGCGa-- -3'
miRNA:   3'- uuCGCCGAGcu-GuGCGUGCUUGCcac -5'
11134 3' -56.9 NC_002794.1 + 12219 0.66 0.918888
Target:  5'- cGGCGGCgUCGGCG-GCGCcGGCGGc- -3'
miRNA:   3'- uUCGCCG-AGCUGUgCGUGcUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 876 0.71 0.639135
Target:  5'- gAGGCGG-UCGGCguGCGCGCGGGCcgGGUGc -3'
miRNA:   3'- -UUCGCCgAGCUG--UGCGUGCUUG--CCAC- -5'
11134 3' -56.9 NC_002794.1 + 286 0.66 0.888202
Target:  5'- cGGCGGCccUGGCGCGC-CGAACGc-- -3'
miRNA:   3'- uUCGCCGa-GCUGUGCGuGCUUGCcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.