miRNA display CGI


Results 81 - 100 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 3' -56.9 NC_002794.1 + 37966 0.67 0.874381
Target:  5'- cGGCGGCUCGugGuacgaGC-CGAucGCGGUc -3'
miRNA:   3'- uUCGCCGAGCugUg----CGuGCU--UGCCAc -5'
11134 3' -56.9 NC_002794.1 + 142405 0.67 0.867154
Target:  5'- cAGGCGGCgUCGGCGgCGC-CGGGCGcGa- -3'
miRNA:   3'- -UUCGCCG-AGCUGU-GCGuGCUUGC-Cac -5'
11134 3' -56.9 NC_002794.1 + 129081 0.67 0.874381
Target:  5'- uGGCGGCg-GAC-CGUcCGGugGGUGg -3'
miRNA:   3'- uUCGCCGagCUGuGCGuGCUugCCAC- -5'
11134 3' -56.9 NC_002794.1 + 106948 0.67 0.873667
Target:  5'- cGGCGGCgccuggaGACACGCgucgccucgcgcgGCGGccggcacgGCGGUGg -3'
miRNA:   3'- uUCGCCGag-----CUGUGCG-------------UGCU--------UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 46316 0.67 0.86642
Target:  5'- -cGCGGCggCGACgGCGCcgucgccGCGGACGGc- -3'
miRNA:   3'- uuCGCCGa-GCUG-UGCG-------UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 112481 0.67 0.867154
Target:  5'- gGAGCuGCUCGuagcgcucCACGUaccGCGAGCGGUc -3'
miRNA:   3'- -UUCGcCGAGCu-------GUGCG---UGCUUGCCAc -5'
11134 3' -56.9 NC_002794.1 + 100057 0.67 0.859723
Target:  5'- --cCGGCUcagCGACACGCugGAGCuGGc- -3'
miRNA:   3'- uucGCCGA---GCUGUGCGugCUUG-CCac -5'
11134 3' -56.9 NC_002794.1 + 111171 0.67 0.874381
Target:  5'- -cGCGGUgcagGGCGCGCACGAACu--- -3'
miRNA:   3'- uuCGCCGag--CUGUGCGUGCUUGccac -5'
11134 3' -56.9 NC_002794.1 + 97423 0.67 0.874381
Target:  5'- aGAGCGGCaacaCGAgGCGCuACGucACGGUu -3'
miRNA:   3'- -UUCGCCGa---GCUgUGCG-UGCu-UGCCAc -5'
11134 3' -56.9 NC_002794.1 + 113146 0.67 0.874381
Target:  5'- aGGGCGGgCgCGucagcguguaGCGCGCGCGGGCGGc- -3'
miRNA:   3'- -UUCGCC-GaGC----------UGUGCGUGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 127363 0.66 0.888202
Target:  5'- cGGCGGCgCGGC-CGCucgugucgGCGGACGGc- -3'
miRNA:   3'- uUCGCCGaGCUGuGCG--------UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 286 0.66 0.888202
Target:  5'- cGGCGGCccUGGCGCGC-CGAACGc-- -3'
miRNA:   3'- uUCGCCGa-GCUGUGCGuGCUUGCcac -5'
11134 3' -56.9 NC_002794.1 + 187465 0.67 0.881398
Target:  5'- cGGCGucGCUCGGCGCGCGcCGGGCcgaGGa- -3'
miRNA:   3'- uUCGC--CGAGCUGUGCGU-GCUUG---CCac -5'
11134 3' -56.9 NC_002794.1 + 149289 0.67 0.881398
Target:  5'- cGGCGGCUCGcuCACGgG-GGGCGGg- -3'
miRNA:   3'- uUCGCCGAGCu-GUGCgUgCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 51276 0.67 0.881398
Target:  5'- gAGGCaGGCgCGGCcCGCcCGAACGGg- -3'
miRNA:   3'- -UUCG-CCGaGCUGuGCGuGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 94481 0.67 0.881398
Target:  5'- cGGCGGCg-GACGCGgcCGCGGGCcGUGg -3'
miRNA:   3'- uUCGCCGagCUGUGC--GUGCUUGcCAC- -5'
11134 3' -56.9 NC_002794.1 + 107538 0.67 0.881398
Target:  5'- -cGCGGCgcCGGCG-GCgACGAccGCGGUGg -3'
miRNA:   3'- uuCGCCGa-GCUGUgCG-UGCU--UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 180871 0.67 0.881398
Target:  5'- gAGGCGGCggaucCGGCGCGCcCGGucucggccGCGGa- -3'
miRNA:   3'- -UUCGCCGa----GCUGUGCGuGCU--------UGCCac -5'
11134 3' -56.9 NC_002794.1 + 30749 0.67 0.881398
Target:  5'- -cGCGGCU-GGCGCGCugGAGgaucUGGa- -3'
miRNA:   3'- uuCGCCGAgCUGUGCGugCUU----GCCac -5'
11134 3' -56.9 NC_002794.1 + 107224 0.67 0.874381
Target:  5'- cGGGCGGCgcgCGACGgGgGCGGcgucGCGGa- -3'
miRNA:   3'- -UUCGCCGa--GCUGUgCgUGCU----UGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.