Results 101 - 119 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11134 | 3' | -56.9 | NC_002794.1 | + | 73319 | 0.67 | 0.852094 |
Target: 5'- cGGCGacgcguaccuGCUCGuCACGgACGGACGGa- -3' miRNA: 3'- uUCGC----------CGAGCuGUGCgUGCUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 120105 | 0.68 | 0.836266 |
Target: 5'- cGAGCGcGCcgcgCGugACGCGCGcGACGGc- -3' miRNA: 3'- -UUCGC-CGa---GCugUGCGUGC-UUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 54240 | 0.68 | 0.844273 |
Target: 5'- gAAGCGGC-CGA-GCGCGCGGuccACGGc- -3' miRNA: 3'- -UUCGCCGaGCUgUGCGUGCU---UGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 106948 | 0.67 | 0.873667 |
Target: 5'- cGGCGGCgccuggaGACACGCgucgccucgcgcgGCGGccggcacgGCGGUGg -3' miRNA: 3'- uUCGCCGag-----CUGUGCG-------------UGCU--------UGCCAC- -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 129081 | 0.67 | 0.874381 |
Target: 5'- uGGCGGCg-GAC-CGUcCGGugGGUGg -3' miRNA: 3'- uUCGCCGagCUGuGCGuGCUugCCAC- -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 142405 | 0.67 | 0.867154 |
Target: 5'- cAGGCGGCgUCGGCGgCGC-CGGGCGcGa- -3' miRNA: 3'- -UUCGCCG-AGCUGU-GCGuGCUUGC-Cac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 94481 | 0.67 | 0.881398 |
Target: 5'- cGGCGGCg-GACGCGgcCGCGGGCcGUGg -3' miRNA: 3'- uUCGCCGagCUGUGC--GUGCUUGcCAC- -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 107538 | 0.67 | 0.881398 |
Target: 5'- -cGCGGCgcCGGCG-GCgACGAccGCGGUGg -3' miRNA: 3'- uuCGCCGa-GCUGUgCG-UGCU--UGCCAC- -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 180871 | 0.67 | 0.881398 |
Target: 5'- gAGGCGGCggaucCGGCGCGCcCGGucucggccGCGGa- -3' miRNA: 3'- -UUCGCCGa----GCUGUGCGuGCU--------UGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 30749 | 0.67 | 0.881398 |
Target: 5'- -cGCGGCU-GGCGCGCugGAGgaucUGGa- -3' miRNA: 3'- uuCGCCGAgCUGUGCGugCUU----GCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 107224 | 0.67 | 0.874381 |
Target: 5'- cGGGCGGCgcgCGACGgGgGCGGcgucGCGGa- -3' miRNA: 3'- -UUCGCCGa--GCUGUgCgUGCU----UGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 113146 | 0.67 | 0.874381 |
Target: 5'- aGGGCGGgCgCGucagcguguaGCGCGCGCGGGCGGc- -3' miRNA: 3'- -UUCGCC-GaGC----------UGUGCGUGCUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 97423 | 0.67 | 0.874381 |
Target: 5'- aGAGCGGCaacaCGAgGCGCuACGucACGGUu -3' miRNA: 3'- -UUCGCCGa---GCUgUGCG-UGCu-UGCCAc -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 111171 | 0.67 | 0.874381 |
Target: 5'- -cGCGGUgcagGGCGCGCACGAACu--- -3' miRNA: 3'- uuCGCCGag--CUGUGCGUGCUUGccac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 53770 | 0.67 | 0.874381 |
Target: 5'- cGGCGGCgggacgcccgCGACGCGCcCG-GCGGg- -3' miRNA: 3'- uUCGCCGa---------GCUGUGCGuGCuUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 95817 | 0.67 | 0.874381 |
Target: 5'- gGAGCGGCggCGGC-CGgGgGAGCGGc- -3' miRNA: 3'- -UUCGCCGa-GCUGuGCgUgCUUGCCac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 99596 | 0.67 | 0.874381 |
Target: 5'- -cGCGGCggCGGCGCGCGCucGCGc-- -3' miRNA: 3'- uuCGCCGa-GCUGUGCGUGcuUGCcac -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 37966 | 0.67 | 0.874381 |
Target: 5'- cGGCGGCUCGugGuacgaGC-CGAucGCGGUc -3' miRNA: 3'- uUCGCCGAGCugUg----CGuGCU--UGCCAc -5' |
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11134 | 3' | -56.9 | NC_002794.1 | + | 38651 | 0.68 | 0.836266 |
Target: 5'- cGGaGGCUCGACuauuugacucccGCGCGCGAcccGCGGa- -3' miRNA: 3'- uUCgCCGAGCUG------------UGCGUGCU---UGCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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