miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 3' -56.9 NC_002794.1 + 130551 0.66 0.913204
Target:  5'- -cGCGGCgUCGcCGCGCACGuguUGGc- -3'
miRNA:   3'- uuCGCCG-AGCuGUGCGUGCuu-GCCac -5'
11134 3' -56.9 NC_002794.1 + 106316 0.66 0.91833
Target:  5'- cGAGCG---CGACGCGCGCGAcgggucgACGGUu -3'
miRNA:   3'- -UUCGCcgaGCUGUGCGUGCU-------UGCCAc -5'
11134 3' -56.9 NC_002794.1 + 91880 0.66 0.918888
Target:  5'- uGGCGGCggCGGC-CGCgACGAGCaGUu -3'
miRNA:   3'- uUCGCCGa-GCUGuGCG-UGCUUGcCAc -5'
11134 3' -56.9 NC_002794.1 + 107068 0.66 0.918888
Target:  5'- -cGCGGCgccgcCGGCAUGUcggagccgACGGGCGGg- -3'
miRNA:   3'- uuCGCCGa----GCUGUGCG--------UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 138296 0.66 0.918888
Target:  5'- uGGCGGcCUUGGCcCGCACGcuguCGGg- -3'
miRNA:   3'- uUCGCC-GAGCUGuGCGUGCuu--GCCac -5'
11134 3' -56.9 NC_002794.1 + 101507 0.66 0.907291
Target:  5'- cGAGCGGUgCGGCACaCGCcGGCGGg- -3'
miRNA:   3'- -UUCGCCGaGCUGUGcGUGcUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 92339 0.66 0.907291
Target:  5'- cGGGCGGCUCGGCgucaACGU-CGAcCGGc- -3'
miRNA:   3'- -UUCGCCGAGCUG----UGCGuGCUuGCCac -5'
11134 3' -56.9 NC_002794.1 + 187465 0.67 0.881398
Target:  5'- cGGCGucGCUCGGCGCGCGcCGGGCcgaGGa- -3'
miRNA:   3'- uUCGC--CGAGCUGUGCGU-GCUUG---CCac -5'
11134 3' -56.9 NC_002794.1 + 286 0.66 0.888202
Target:  5'- cGGCGGCccUGGCGCGC-CGAACGc-- -3'
miRNA:   3'- uUCGCCGa-GCUGUGCGuGCUUGCcac -5'
11134 3' -56.9 NC_002794.1 + 127363 0.66 0.888202
Target:  5'- cGGCGGCgCGGC-CGCucgugucgGCGGACGGc- -3'
miRNA:   3'- uUCGCCGaGCUGuGCG--------UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 120051 0.66 0.888202
Target:  5'- cGGCGGCgguggCGGC-CGCGgaggcCGAcgcgGCGGUGg -3'
miRNA:   3'- uUCGCCGa----GCUGuGCGU-----GCU----UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 41291 0.66 0.888202
Target:  5'- cGGCGGCUcCGACGCGgGCcgcGugGGg- -3'
miRNA:   3'- uUCGCCGA-GCUGUGCgUGc--UugCCac -5'
11134 3' -56.9 NC_002794.1 + 182295 0.66 0.888202
Target:  5'- gGGGCGGgUgGACGgGCagACGGGCGGa- -3'
miRNA:   3'- -UUCGCCgAgCUGUgCG--UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 91209 0.66 0.888202
Target:  5'- -cGCGGacggCGACGCGacgGCGGACGGc- -3'
miRNA:   3'- uuCGCCga--GCUGUGCg--UGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 15282 0.66 0.894787
Target:  5'- -cGCGGCUCccuC-CGCGCGAGCGa-- -3'
miRNA:   3'- uuCGCCGAGcu-GuGCGUGCUUGCcac -5'
11134 3' -56.9 NC_002794.1 + 21451 0.66 0.901152
Target:  5'- -cGCGucGCUCGGCGuCGCcgugACGGcaACGGUGg -3'
miRNA:   3'- uuCGC--CGAGCUGU-GCG----UGCU--UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 65249 0.66 0.901152
Target:  5'- cGGCGGCgaucCGGCcuCGC-CGAGCGGc- -3'
miRNA:   3'- uUCGCCGa---GCUGu-GCGuGCUUGCCac -5'
11134 3' -56.9 NC_002794.1 + 37286 0.66 0.900525
Target:  5'- -cGCGGCguacaaCGACACGUaggggaacGCGGggcagaagacggaGCGGUGg -3'
miRNA:   3'- uuCGCCGa-----GCUGUGCG--------UGCU-------------UGCCAC- -5'
11134 3' -56.9 NC_002794.1 + 44386 0.66 0.894787
Target:  5'- -cGCGacGCUCGACGCGCcCGuucCGGUc -3'
miRNA:   3'- uuCGC--CGAGCUGUGCGuGCuu-GCCAc -5'
11134 3' -56.9 NC_002794.1 + 105549 0.66 0.901152
Target:  5'- cGGCGGCUCGG-GCGaACGGAUagGGUGc -3'
miRNA:   3'- uUCGCCGAGCUgUGCgUGCUUG--CCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.