miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 5' -58.8 NC_002794.1 + 144858 0.65 0.849338
Target:  5'- gAUGCUGCuccacacguuucuGACucgGGUGCGGGGCgAGACg -3'
miRNA:   3'- aUGCGGCG-------------CUG---CCACGUCUCG-UCUGa -5'
11134 5' -58.8 NC_002794.1 + 175415 0.66 0.842298
Target:  5'- cACGCCggugaGCGAUGccGCGGcGCAGACg -3'
miRNA:   3'- aUGCGG-----CGCUGCcaCGUCuCGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 69420 0.66 0.842298
Target:  5'- --aGCCGCGACaG-GCAGAGCGu--- -3'
miRNA:   3'- augCGGCGCUGcCaCGUCUCGUcuga -5'
11134 5' -58.8 NC_002794.1 + 111319 0.66 0.842298
Target:  5'- gACGCCGgGccaGCGGcGCGGGccGCAGAUc -3'
miRNA:   3'- aUGCGGCgC---UGCCaCGUCU--CGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 138967 0.66 0.842298
Target:  5'- gACGCgGCgGACGGguugGCcuGGCGGGCc -3'
miRNA:   3'- aUGCGgCG-CUGCCa---CGucUCGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 36873 0.66 0.841506
Target:  5'- cUGCaGCCGCGccagguaGCGcGUGCAGAGCGuccagaggucgcGGCg -3'
miRNA:   3'- -AUG-CGGCGC-------UGC-CACGUCUCGU------------CUGa -5'
11134 5' -58.8 NC_002794.1 + 74368 0.66 0.834303
Target:  5'- cACGCCGUGcuuCGGggGCGGccGGCGcGACUa -3'
miRNA:   3'- aUGCGGCGCu--GCCa-CGUC--UCGU-CUGA- -5'
11134 5' -58.8 NC_002794.1 + 179681 0.66 0.834303
Target:  5'- cGCgGCgGCGACGGUGgCGGcGGC-GACg -3'
miRNA:   3'- aUG-CGgCGCUGCCAC-GUC-UCGuCUGa -5'
11134 5' -58.8 NC_002794.1 + 106367 0.66 0.834303
Target:  5'- gGCGCCGguuCGcGCGGaggGCAGAcgGCGGGCg -3'
miRNA:   3'- aUGCGGC---GC-UGCCa--CGUCU--CGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 184078 0.66 0.834303
Target:  5'- cGCGCC-C-ACGGUGUAGcGGCAGAa- -3'
miRNA:   3'- aUGCGGcGcUGCCACGUC-UCGUCUga -5'
11134 5' -58.8 NC_002794.1 + 141448 0.66 0.834303
Target:  5'- gGCGCCGgGAgCGGcGCGGcGUccGGACUg -3'
miRNA:   3'- aUGCGGCgCU-GCCaCGUCuCG--UCUGA- -5'
11134 5' -58.8 NC_002794.1 + 119505 0.66 0.826132
Target:  5'- gGgGUCGuCGGCGGcGCGGAGCcGGCc -3'
miRNA:   3'- aUgCGGC-GCUGCCaCGUCUCGuCUGa -5'
11134 5' -58.8 NC_002794.1 + 32520 0.66 0.826132
Target:  5'- -cCGCCGUGcCGGUGauGAGCAaGACg -3'
miRNA:   3'- auGCGGCGCuGCCACguCUCGU-CUGa -5'
11134 5' -58.8 NC_002794.1 + 188252 0.66 0.826132
Target:  5'- gGCgGCgGCGGCGGUaGCGGcgggccggguAGCGGAUg -3'
miRNA:   3'- aUG-CGgCGCUGCCA-CGUC----------UCGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 120182 0.66 0.826132
Target:  5'- cGCGCCGCcaaGCGGUucaaggGCAcGAGCGGGg- -3'
miRNA:   3'- aUGCGGCGc--UGCCA------CGU-CUCGUCUga -5'
11134 5' -58.8 NC_002794.1 + 33192 0.66 0.821149
Target:  5'- gUGCGUgaaauuguuuaacagUGCGACGGUGCGGcaGGUcucGGACg -3'
miRNA:   3'- -AUGCG---------------GCGCUGCCACGUC--UCG---UCUGa -5'
11134 5' -58.8 NC_002794.1 + 103571 0.66 0.817794
Target:  5'- gACGCCGUGgccgacgagcaGCGGU-CGG-GCAGGCa -3'
miRNA:   3'- aUGCGGCGC-----------UGCCAcGUCuCGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 145578 0.66 0.817794
Target:  5'- aGCGCCgacggaGCGGCGGccggcucccGCGGAGuCGGGCg -3'
miRNA:   3'- aUGCGG------CGCUGCCa--------CGUCUC-GUCUGa -5'
11134 5' -58.8 NC_002794.1 + 135745 0.66 0.815261
Target:  5'- cGCGCCGCGcccucgaggaucagGCGGUGCuggcugucGAGCuGAa- -3'
miRNA:   3'- aUGCGGCGC--------------UGCCACGu-------CUCGuCUga -5'
11134 5' -58.8 NC_002794.1 + 94464 0.66 0.809295
Target:  5'- --gGUgGCGACGGcaacgGCGGcGGCGGACg -3'
miRNA:   3'- augCGgCGCUGCCa----CGUC-UCGUCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.