miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 5' -58.8 NC_002794.1 + 104896 0.67 0.782913
Target:  5'- --gGCCGCGAgGcgccGUGCugcucGAGCAGGCg -3'
miRNA:   3'- augCGGCGCUgC----CACGu----CUCGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 36950 0.67 0.77385
Target:  5'- cGCGUCGCG-CGGcgGCAG-GCAGuCg -3'
miRNA:   3'- aUGCGGCGCuGCCa-CGUCuCGUCuGa -5'
11134 5' -58.8 NC_002794.1 + 154372 0.67 0.77385
Target:  5'- cAgGCCGCGGCGGcgGCGG-GCAcGCc -3'
miRNA:   3'- aUgCGGCGCUGCCa-CGUCuCGUcUGa -5'
11134 5' -58.8 NC_002794.1 + 139994 0.67 0.77385
Target:  5'- gACGCgG-GACGGUGCGGGuGgAGGCc -3'
miRNA:   3'- aUGCGgCgCUGCCACGUCU-CgUCUGa -5'
11134 5' -58.8 NC_002794.1 + 145320 0.67 0.764667
Target:  5'- gGCG-CGCGGCGGgcgGCGcucgggcccGAGCGGGCc -3'
miRNA:   3'- aUGCgGCGCUGCCa--CGU---------CUCGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 120121 0.67 0.77385
Target:  5'- gACGCgCGCGACGGcgacCGGGGaCGGGCc -3'
miRNA:   3'- aUGCG-GCGCUGCCac--GUCUC-GUCUGa -5'
11134 5' -58.8 NC_002794.1 + 49014 0.67 0.764667
Target:  5'- cGCGCCGCGGCGGccGCGGcGUcguccGGCg -3'
miRNA:   3'- aUGCGGCGCUGCCa-CGUCuCGu----CUGa -5'
11134 5' -58.8 NC_002794.1 + 125703 0.67 0.764667
Target:  5'- cUGCG-CGUGACGGUggaGCGGAGCGaACg -3'
miRNA:   3'- -AUGCgGCGCUGCCA---CGUCUCGUcUGa -5'
11134 5' -58.8 NC_002794.1 + 44990 0.67 0.755372
Target:  5'- aACGCCuuGGCcGUGCGGAccuguuGCAGACUc -3'
miRNA:   3'- aUGCGGcgCUGcCACGUCU------CGUCUGA- -5'
11134 5' -58.8 NC_002794.1 + 65759 0.67 0.782913
Target:  5'- cGCGCCGCcgccgcccgugGugGG-GCcGAGCGGAUc -3'
miRNA:   3'- aUGCGGCG-----------CugCCaCGuCUCGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 52632 0.67 0.782913
Target:  5'- -cCGCCGCGucgaACGGgagccggaGCGGcGGCAGGCUc -3'
miRNA:   3'- auGCGGCGC----UGCCa-------CGUC-UCGUCUGA- -5'
11134 5' -58.8 NC_002794.1 + 96888 0.67 0.800644
Target:  5'- gGCGCUacggggcagGCGuCGG-GCGGAGguGGCg -3'
miRNA:   3'- aUGCGG---------CGCuGCCaCGUCUCguCUGa -5'
11134 5' -58.8 NC_002794.1 + 48194 0.67 0.795382
Target:  5'- cUGCGCCaaCGGcCGGccuucgagguagagGCAGAGCAGGCg -3'
miRNA:   3'- -AUGCGGc-GCU-GCCa-------------CGUCUCGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 36274 0.67 0.79977
Target:  5'- aACGCCGCGucccgcgacuGCgGGUGCAcGAGCucgccccggacccAGACg -3'
miRNA:   3'- aUGCGGCGC----------UG-CCACGU-CUCG-------------UCUGa -5'
11134 5' -58.8 NC_002794.1 + 103806 0.67 0.791847
Target:  5'- gUGCGCCuGCGACGGcgGCgccgacguGGAgucGCAGGCc -3'
miRNA:   3'- -AUGCGG-CGCUGCCa-CG--------UCU---CGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 191995 0.67 0.791847
Target:  5'- gACgGCCGgGACGGUaGCGGcGguGGCc -3'
miRNA:   3'- aUG-CGGCgCUGCCA-CGUCuCguCUGa -5'
11134 5' -58.8 NC_002794.1 + 137616 0.67 0.789181
Target:  5'- -uCGCgGCGGCGGUGCccacgacgacguccuGGCGGGCg -3'
miRNA:   3'- auGCGgCGCUGCCACGuc-------------UCGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 184575 0.67 0.782913
Target:  5'- -cCGCCGCGGCGGcgGCGGccacGCGcGGCc -3'
miRNA:   3'- auGCGGCGCUGCCa-CGUCu---CGU-CUGa -5'
11134 5' -58.8 NC_002794.1 + 114666 0.67 0.782913
Target:  5'- cGCGCgCGCGcCGGUacucggaccGCAGGGCccGGACc -3'
miRNA:   3'- aUGCG-GCGCuGCCA---------CGUCUCG--UCUGa -5'
11134 5' -58.8 NC_002794.1 + 118000 0.67 0.782913
Target:  5'- gGCuGCCGCGGCaGGaGCAccuGGCAGGCg -3'
miRNA:   3'- aUG-CGGCGCUG-CCaCGUc--UCGUCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.