miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 5' -58.8 NC_002794.1 + 126295 0.75 0.32511
Target:  5'- gUGCGCCGCGcgccugGCGGUGCAgcgGAGCGuGACc -3'
miRNA:   3'- -AUGCGGCGC------UGCCACGU---CUCGU-CUGa -5'
11134 5' -58.8 NC_002794.1 + 111756 0.75 0.339752
Target:  5'- gGCGCCGCG-CGGcGCcgucGGGGCGGGCUc -3'
miRNA:   3'- aUGCGGCGCuGCCaCG----UCUCGUCUGA- -5'
11134 5' -58.8 NC_002794.1 + 106433 0.75 0.339008
Target:  5'- gGCGCUGUuggagaaGGCGGUGCAG-GCGGACc -3'
miRNA:   3'- aUGCGGCG-------CUGCCACGUCuCGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 86921 0.74 0.370447
Target:  5'- gACGcCCGUGGCGGgcagGCGGGGCGGGa- -3'
miRNA:   3'- aUGC-GGCGCUGCCa---CGUCUCGUCUga -5'
11134 5' -58.8 NC_002794.1 + 152579 0.73 0.428543
Target:  5'- -cCGCCGCGGCGGccgccacgucccUGCGGcGCGGGCc -3'
miRNA:   3'- auGCGGCGCUGCC------------ACGUCuCGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 122909 0.73 0.437273
Target:  5'- gGCGCCgaguucGCGACGGUGUacgugcagaaGGAGCGGAa- -3'
miRNA:   3'- aUGCGG------CGCUGCCACG----------UCUCGUCUga -5'
11134 5' -58.8 NC_002794.1 + 116747 0.72 0.509559
Target:  5'- gACGCCGCcgaggaaGGCGGcUGCAG-GUAGGCg -3'
miRNA:   3'- aUGCGGCG-------CUGCC-ACGUCuCGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 116128 0.72 0.473178
Target:  5'- -cCGCCGCGGCGGcgGCGGcGGCGGcCa -3'
miRNA:   3'- auGCGGCGCUGCCa-CGUC-UCGUCuGa -5'
11134 5' -58.8 NC_002794.1 + 94006 0.72 0.501055
Target:  5'- gGCGCCgGCGGCGGgccgGCGGguuccgccGGCGGGCc -3'
miRNA:   3'- aUGCGG-CGCUGCCa---CGUC--------UCGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 55308 0.72 0.473178
Target:  5'- gGCGUCGCGGCGG-GCGcGGGCGG-CUu -3'
miRNA:   3'- aUGCGGCGCUGCCaCGU-CUCGUCuGA- -5'
11134 5' -58.8 NC_002794.1 + 32576 0.72 0.49168
Target:  5'- -uCGCgCGCGGCGGUGCcGGGGCcgGGGCc -3'
miRNA:   3'- auGCG-GCGCUGCCACG-UCUCG--UCUGa -5'
11134 5' -58.8 NC_002794.1 + 128682 0.72 0.473178
Target:  5'- -uCGCCGCGGCGGUcCGGAGgcucggaaCAGACg -3'
miRNA:   3'- auGCGGCGCUGCCAcGUCUC--------GUCUGa -5'
11134 5' -58.8 NC_002794.1 + 126564 0.72 0.510508
Target:  5'- -uCGCCGCGGCGGUGCu--GCuGAUc -3'
miRNA:   3'- auGCGGCGCUGCCACGucuCGuCUGa -5'
11134 5' -58.8 NC_002794.1 + 110631 0.72 0.507664
Target:  5'- gGCGCCGCGGCGGcgggGuCGGGuuucuccggcggcuGCAGACa -3'
miRNA:   3'- aUGCGGCGCUGCCa---C-GUCU--------------CGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 118322 0.71 0.568603
Target:  5'- -uCGUCGCGACGGgcgGCgagaAGAGCAGGu- -3'
miRNA:   3'- auGCGGCGCUGCCa--CG----UCUCGUCUga -5'
11134 5' -58.8 NC_002794.1 + 94048 0.71 0.558782
Target:  5'- --aGCgGCGGCGGUGCGgGGGCGG-Cg -3'
miRNA:   3'- augCGgCGCUGCCACGU-CUCGUCuGa -5'
11134 5' -58.8 NC_002794.1 + 153416 0.71 0.520035
Target:  5'- aGCGCCGCGcGCGGaGCcGAGCuGGGCg -3'
miRNA:   3'- aUGCGGCGC-UGCCaCGuCUCG-UCUGa -5'
11134 5' -58.8 NC_002794.1 + 64810 0.71 0.568603
Target:  5'- gACGCCGCgGACGGcgGC-GAGCcGGCg -3'
miRNA:   3'- aUGCGGCG-CUGCCa-CGuCUCGuCUGa -5'
11134 5' -58.8 NC_002794.1 + 10340 0.7 0.608252
Target:  5'- gGCGCCGCGACcgGGUGaCGGAcuGCucGACg -3'
miRNA:   3'- aUGCGGCGCUG--CCAC-GUCU--CGu-CUGa -5'
11134 5' -58.8 NC_002794.1 + 156040 0.7 0.617226
Target:  5'- cGCGUcgCGCGACGGggGCagccgugucgaauAGAGCGGGCg -3'
miRNA:   3'- aUGCG--GCGCUGCCa-CG-------------UCUCGUCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.