miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11134 5' -58.8 NC_002794.1 + 10340 0.7 0.608252
Target:  5'- gGCGCCGCGACcgGGUGaCGGAcuGCucGACg -3'
miRNA:   3'- aUGCGGCGCUG--CCAC-GUCU--CGu-CUGa -5'
11134 5' -58.8 NC_002794.1 + 30408 0.69 0.687888
Target:  5'- gAUGCCGUGGuCGaacgucGUGCAGAuauGCAGACUc -3'
miRNA:   3'- aUGCGGCGCU-GC------CACGUCU---CGUCUGA- -5'
11134 5' -58.8 NC_002794.1 + 32520 0.66 0.826132
Target:  5'- -cCGCCGUGcCGGUGauGAGCAaGACg -3'
miRNA:   3'- auGCGGCGCuGCCACguCUCGU-CUGa -5'
11134 5' -58.8 NC_002794.1 + 32576 0.72 0.49168
Target:  5'- -uCGCgCGCGGCGGUGCcGGGGCcgGGGCc -3'
miRNA:   3'- auGCG-GCGCUGCCACG-UCUCG--UCUGa -5'
11134 5' -58.8 NC_002794.1 + 33192 0.66 0.821149
Target:  5'- gUGCGUgaaauuguuuaacagUGCGACGGUGCGGcaGGUcucGGACg -3'
miRNA:   3'- -AUGCG---------------GCGCUGCCACGUC--UCG---UCUGa -5'
11134 5' -58.8 NC_002794.1 + 34839 0.69 0.687888
Target:  5'- gGCGCCGgaGCGGgcguCGGAGCGGGCg -3'
miRNA:   3'- aUGCGGCgcUGCCac--GUCUCGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 36274 0.67 0.79977
Target:  5'- aACGCCGCGucccgcgacuGCgGGUGCAcGAGCucgccccggacccAGACg -3'
miRNA:   3'- aUGCGGCGC----------UG-CCACGU-CUCG-------------UCUGa -5'
11134 5' -58.8 NC_002794.1 + 36873 0.66 0.841506
Target:  5'- cUGCaGCCGCGccagguaGCGcGUGCAGAGCGuccagaggucgcGGCg -3'
miRNA:   3'- -AUG-CGGCGC-------UGC-CACGUCUCGU------------CUGa -5'
11134 5' -58.8 NC_002794.1 + 36950 0.67 0.77385
Target:  5'- cGCGUCGCG-CGGcgGCAG-GCAGuCg -3'
miRNA:   3'- aUGCGGCGCuGCCa-CGUCuCGUCuGa -5'
11134 5' -58.8 NC_002794.1 + 37752 0.68 0.745974
Target:  5'- gGCGgCGCGGCGGcGCcggcgGGAGCGGcCg -3'
miRNA:   3'- aUGCgGCGCUGCCaCG-----UCUCGUCuGa -5'
11134 5' -58.8 NC_002794.1 + 44990 0.67 0.755372
Target:  5'- aACGCCuuGGCcGUGCGGAccuguuGCAGACUc -3'
miRNA:   3'- aUGCGGcgCUGcCACGUCU------CGUCUGA- -5'
11134 5' -58.8 NC_002794.1 + 48194 0.67 0.795382
Target:  5'- cUGCGCCaaCGGcCGGccuucgagguagagGCAGAGCAGGCg -3'
miRNA:   3'- -AUGCGGc-GCU-GCCa-------------CGUCUCGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 49014 0.67 0.764667
Target:  5'- cGCGCCGCGGCGGccGCGGcGUcguccGGCg -3'
miRNA:   3'- aUGCGGCGCUGCCa-CGUCuCGu----CUGa -5'
11134 5' -58.8 NC_002794.1 + 52632 0.67 0.782913
Target:  5'- -cCGCCGCGucgaACGGgagccggaGCGGcGGCAGGCUc -3'
miRNA:   3'- auGCGGCGC----UGCCa-------CGUC-UCGUCUGA- -5'
11134 5' -58.8 NC_002794.1 + 54264 0.7 0.588368
Target:  5'- gGCGCCGCGuCGGgccaaaccgUGCAGAcGCAG-Ca -3'
miRNA:   3'- aUGCGGCGCuGCC---------ACGUCU-CGUCuGa -5'
11134 5' -58.8 NC_002794.1 + 55308 0.72 0.473178
Target:  5'- gGCGUCGCGGCGG-GCGcGGGCGG-CUu -3'
miRNA:   3'- aUGCGGCGCUGCCaCGU-CUCGUCuGA- -5'
11134 5' -58.8 NC_002794.1 + 64810 0.71 0.568603
Target:  5'- gACGCCGCgGACGGcgGC-GAGCcGGCg -3'
miRNA:   3'- aUGCGGCG-CUGCCa-CGuCUCGuCUGa -5'
11134 5' -58.8 NC_002794.1 + 65759 0.67 0.782913
Target:  5'- cGCGCCGCcgccgcccgugGugGG-GCcGAGCGGAUc -3'
miRNA:   3'- aUGCGGCG-----------CugCCaCGuCUCGUCUGa -5'
11134 5' -58.8 NC_002794.1 + 69420 0.66 0.842298
Target:  5'- --aGCCGCGACaG-GCAGAGCGu--- -3'
miRNA:   3'- augCGGCGCUGcCaCGUCUCGUcuga -5'
11134 5' -58.8 NC_002794.1 + 70260 0.7 0.598298
Target:  5'- cGCGCaGCGACGGagGCcgcgaaggccggAGAGCAGGCc -3'
miRNA:   3'- aUGCGgCGCUGCCa-CG------------UCUCGUCUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.