miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11135 5' -58.1 NC_002794.1 + 118267 0.66 0.918111
Target:  5'- gCCgGGGCGGCGG-CGccggcGUCGggGACc -3'
miRNA:   3'- gGGgCCUGCUGCCaGCa----CGGCaaCUG- -5'
11135 5' -58.1 NC_002794.1 + 44192 0.66 0.91482
Target:  5'- aCUCCGGGCGAagccgggccgacgucCGGcUCGggcGCCGagGGCu -3'
miRNA:   3'- -GGGGCCUGCU---------------GCC-AGCa--CGGCaaCUG- -5'
11135 5' -58.1 NC_002794.1 + 115049 0.66 0.912583
Target:  5'- -aCCGGGCGGCGGgCGgcagcGCCGUc--- -3'
miRNA:   3'- ggGGCCUGCUGCCaGCa----CGGCAacug -5'
11135 5' -58.1 NC_002794.1 + 89828 0.66 0.912583
Target:  5'- gUCCUGGggaACGAguCGGUCGgccgGCCGUcccuuucucgguUGGCu -3'
miRNA:   3'- -GGGGCC---UGCU--GCCAGCa---CGGCA------------ACUG- -5'
11135 5' -58.1 NC_002794.1 + 153603 0.66 0.912583
Target:  5'- gCCCUGGAagaGACGGcgCGgGCCGccuaucccuggUGGCa -3'
miRNA:   3'- -GGGGCCUg--CUGCCa-GCaCGGCa----------ACUG- -5'
11135 5' -58.1 NC_002794.1 + 128465 0.66 0.912583
Target:  5'- gCCCaGGACGACcggucaccgGGUCGcgGaCCGggGGCc -3'
miRNA:   3'- gGGG-CCUGCUG---------CCAGCa-C-GGCaaCUG- -5'
11135 5' -58.1 NC_002794.1 + 57411 0.66 0.912583
Target:  5'- gCCCGcGugGcCGG-CGUGCUGgucGGCa -3'
miRNA:   3'- gGGGC-CugCuGCCaGCACGGCaa-CUG- -5'
11135 5' -58.1 NC_002794.1 + 151951 0.66 0.912018
Target:  5'- gCCCGcGACGACGGccccgggugcuccUCG-GCCcggGACg -3'
miRNA:   3'- gGGGC-CUGCUGCC-------------AGCaCGGcaaCUG- -5'
11135 5' -58.1 NC_002794.1 + 43305 0.66 0.906841
Target:  5'- aCCCGGGCGGucuUGGUC-UGCuCGaaGACg -3'
miRNA:   3'- gGGGCCUGCU---GCCAGcACG-GCaaCUG- -5'
11135 5' -58.1 NC_002794.1 + 48587 0.66 0.906841
Target:  5'- -gCCGGAgGAgCGGcgCGUcGCCGUcGGCg -3'
miRNA:   3'- ggGGCCUgCU-GCCa-GCA-CGGCAaCUG- -5'
11135 5' -58.1 NC_002794.1 + 49778 0.66 0.900886
Target:  5'- uCCCCGGA-GGCGGUUGggcacgaGCCGa---- -3'
miRNA:   3'- -GGGGCCUgCUGCCAGCa------CGGCaacug -5'
11135 5' -58.1 NC_002794.1 + 63665 0.66 0.900886
Target:  5'- gUCUCGGACGACGaG-CGcgGCCGcggcGACg -3'
miRNA:   3'- -GGGGCCUGCUGC-CaGCa-CGGCaa--CUG- -5'
11135 5' -58.1 NC_002794.1 + 77986 0.66 0.900886
Target:  5'- gCCUCGGaACGGCGGgCGUuguuCCGgcGGCg -3'
miRNA:   3'- -GGGGCC-UGCUGCCaGCAc---GGCaaCUG- -5'
11135 5' -58.1 NC_002794.1 + 145800 0.66 0.900886
Target:  5'- gCUCGGACGACGacGcCGccGCCGgcGGCg -3'
miRNA:   3'- gGGGCCUGCUGC--CaGCa-CGGCaaCUG- -5'
11135 5' -58.1 NC_002794.1 + 179678 0.66 0.900886
Target:  5'- aCCCgCGGcgGCGACGGUgGcGgCGgcGACg -3'
miRNA:   3'- -GGG-GCC--UGCUGCCAgCaCgGCaaCUG- -5'
11135 5' -58.1 NC_002794.1 + 128155 0.66 0.900886
Target:  5'- --aCGcGACGGCGGcUCGcGCCGcgGACg -3'
miRNA:   3'- gggGC-CUGCUGCC-AGCaCGGCaaCUG- -5'
11135 5' -58.1 NC_002794.1 + 107046 0.66 0.900279
Target:  5'- cCCCCGcgucggaGGCGGCGGgcgCGgcGCCGccGGCa -3'
miRNA:   3'- -GGGGC-------CUGCUGCCa--GCa-CGGCaaCUG- -5'
11135 5' -58.1 NC_002794.1 + 123766 0.66 0.894721
Target:  5'- uUCCCGGGCGugGacgccucCGUGuuGgaGGCg -3'
miRNA:   3'- -GGGGCCUGCugCca-----GCACggCaaCUG- -5'
11135 5' -58.1 NC_002794.1 + 100821 0.66 0.894721
Target:  5'- -gCCGGGCGGCGGgg--GCCGgcagccgGGCu -3'
miRNA:   3'- ggGGCCUGCUGCCagcaCGGCaa-----CUG- -5'
11135 5' -58.1 NC_002794.1 + 18695 0.66 0.894721
Target:  5'- uCUCCGGcACGGCGG-CG-GCgGUccgGACg -3'
miRNA:   3'- -GGGGCC-UGCUGCCaGCaCGgCAa--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.