miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 3' -60.6 NC_002794.1 + 182220 0.66 0.757927
Target:  5'- cGGGGCUccgACGGUCagGCCGcaGCA-GGCCAGg -3'
miRNA:   3'- -UUCCGG---UGCCAG--UGGC--UGUgCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 125746 0.66 0.757927
Target:  5'- cGGGCCGCGGgaCGgCGGCcgGCGGCUc- -3'
miRNA:   3'- uUCCGGUGCCa-GUgGCUG--UGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 49433 0.66 0.757927
Target:  5'- --nGUCACGG-CGuCCGGCGCGGUCGu -3'
miRNA:   3'- uucCGGUGCCaGU-GGCUGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 118269 0.66 0.757927
Target:  5'- cGGGGCgGCGG-CGCCGGCGuCGGggaCCGc -3'
miRNA:   3'- -UUCCGgUGCCaGUGGCUGU-GCC---GGUu -5'
11136 3' -60.6 NC_002794.1 + 11267 0.66 0.757927
Target:  5'- cGGGCgaCGCGGUCACCugguGGCGCGuccgcaacaccaGCCAGg -3'
miRNA:   3'- uUCCG--GUGCCAGUGG----CUGUGC------------CGGUU- -5'
11136 3' -60.6 NC_002794.1 + 79441 0.66 0.757927
Target:  5'- -cGGCgGCGGcgACCGGCGCGGagaCGAc -3'
miRNA:   3'- uuCCGgUGCCagUGGCUGUGCCg--GUU- -5'
11136 3' -60.6 NC_002794.1 + 13117 0.66 0.757927
Target:  5'- -cGGCgG-GGUCGCCG-CGCGGCUc- -3'
miRNA:   3'- uuCCGgUgCCAGUGGCuGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 17420 0.66 0.748602
Target:  5'- -cGGCCaucGCGGUCuccgcgccGCCGGCGCucgGGCCc- -3'
miRNA:   3'- uuCCGG---UGCCAG--------UGGCUGUG---CCGGuu -5'
11136 3' -60.6 NC_002794.1 + 113179 0.66 0.748602
Target:  5'- -cGGCgGCGGUCGCgGAgGCGccuccGCCGc -3'
miRNA:   3'- uuCCGgUGCCAGUGgCUgUGC-----CGGUu -5'
11136 3' -60.6 NC_002794.1 + 9328 0.66 0.748602
Target:  5'- gAAGGaaaCGCGGgugcgugCGCCGGCacgACGGUCGAa -3'
miRNA:   3'- -UUCCg--GUGCCa------GUGGCUG---UGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 172465 0.66 0.748602
Target:  5'- cAGGUaACGGUCACCGugACcGCUu- -3'
miRNA:   3'- uUCCGgUGCCAGUGGCugUGcCGGuu -5'
11136 3' -60.6 NC_002794.1 + 17627 0.66 0.748602
Target:  5'- --cGCCGCGGcgagcgauccCGCCGcCGCGGCCGc -3'
miRNA:   3'- uucCGGUGCCa---------GUGGCuGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 87019 0.66 0.745785
Target:  5'- -cGGCgAgGGUCcgcaggauccggggACCGGCGCGGCUc- -3'
miRNA:   3'- uuCCGgUgCCAG--------------UGGCUGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 62581 0.66 0.739181
Target:  5'- cAGcGCCGCcGcCGCCGACGCcagGGCCAc -3'
miRNA:   3'- uUC-CGGUGcCaGUGGCUGUG---CCGGUu -5'
11136 3' -60.6 NC_002794.1 + 113914 0.66 0.739181
Target:  5'- gAAGGCCuccagguCGGcCGCCGAgGCgacgGGCCGc -3'
miRNA:   3'- -UUCCGGu------GCCaGUGGCUgUG----CCGGUu -5'
11136 3' -60.6 NC_002794.1 + 18687 0.66 0.739181
Target:  5'- --cGCCGCcGUCuCCGGCACGGCg-- -3'
miRNA:   3'- uucCGGUGcCAGuGGCUGUGCCGguu -5'
11136 3' -60.6 NC_002794.1 + 181364 0.66 0.739181
Target:  5'- -cGGCCcgguugAgGGUCACgGGCcCGGCCGu -3'
miRNA:   3'- uuCCGG------UgCCAGUGgCUGuGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 185175 0.66 0.739181
Target:  5'- -cGGCgcggCGCGGUCGgcgcggUCGGCGCGGUCAu -3'
miRNA:   3'- uuCCG----GUGCCAGU------GGCUGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 141427 0.66 0.733485
Target:  5'- gGGGGCgGCGGgggCGCCGggggcgccgggagcgGCGCGGCg-- -3'
miRNA:   3'- -UUCCGgUGCCa--GUGGC---------------UGUGCCGguu -5'
11136 3' -60.6 NC_002794.1 + 107056 0.66 0.729671
Target:  5'- gGAGGCgGCGGgcgcggcgcCGCCGGCAUGucggaGCCGAc -3'
miRNA:   3'- -UUCCGgUGCCa--------GUGGCUGUGC-----CGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.