miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 3' -60.6 NC_002794.1 + 179783 0.67 0.690924
Target:  5'- uAGcGCC-CGGUCACCGucgucagguuccACACGGUCu- -3'
miRNA:   3'- uUC-CGGuGCCAGUGGC------------UGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 189665 0.67 0.681101
Target:  5'- -uGGCCgaGCGGUCGCCc---CGGCCGGg -3'
miRNA:   3'- uuCCGG--UGCCAGUGGcuguGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 151605 0.67 0.681101
Target:  5'- cGGGcCCGCGGUUcCuCGGCugACGGCCGg -3'
miRNA:   3'- uUCC-GGUGCCAGuG-GCUG--UGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 94017 0.67 0.681101
Target:  5'- cGGGCCgGCGGguucCGCCGGCG-GGCCc- -3'
miRNA:   3'- uUCCGG-UGCCa---GUGGCUGUgCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 78681 0.67 0.681101
Target:  5'- -cGGCCGcCGGcCgcaugugcgGCCGACACGGCg-- -3'
miRNA:   3'- uuCCGGU-GCCaG---------UGGCUGUGCCGguu -5'
11136 3' -60.6 NC_002794.1 + 145468 0.67 0.681101
Target:  5'- -uGGa-GCGGUCGCCGAa--GGCCGAg -3'
miRNA:   3'- uuCCggUGCCAGUGGCUgugCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 376 0.67 0.681101
Target:  5'- -cGGCCGCGcGaUCcCCGGCACGcuGCCAc -3'
miRNA:   3'- uuCCGGUGC-C-AGuGGCUGUGC--CGGUu -5'
11136 3' -60.6 NC_002794.1 + 103552 0.68 0.59191
Target:  5'- gAAGGCCACcauGG-CGuCCGACGCcguGGCCGAc -3'
miRNA:   3'- -UUCCGGUG---CCaGU-GGCUGUG---CCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 33840 0.68 0.59191
Target:  5'- gAAGGCCGUGGUgaccaGCCGGCACGaGCuCAAc -3'
miRNA:   3'- -UUCCGGUGCCAg----UGGCUGUGC-CG-GUU- -5'
11136 3' -60.6 NC_002794.1 + 8128 0.68 0.59191
Target:  5'- -cGGCCuccuCGGUgACCGGCgACGGCa-- -3'
miRNA:   3'- uuCCGGu---GCCAgUGGCUG-UGCCGguu -5'
11136 3' -60.6 NC_002794.1 + 75475 0.68 0.601801
Target:  5'- ---aCCACGG-CGCCGAgACGGCCc- -3'
miRNA:   3'- uuccGGUGCCaGUGGCUgUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 154327 0.68 0.601801
Target:  5'- -cGGCguCGGUCGucCCGGgugcCGCGGCCGAg -3'
miRNA:   3'- uuCCGguGCCAGU--GGCU----GUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 95763 0.68 0.611713
Target:  5'- cGGGGCgGCGGcCG-CGACGgCGGCCGGg -3'
miRNA:   3'- -UUCCGgUGCCaGUgGCUGU-GCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 41288 0.68 0.611713
Target:  5'- -cGGCgGCGG-CuCCGACGCgGGCCGc -3'
miRNA:   3'- uuCCGgUGCCaGuGGCUGUG-CCGGUu -5'
11136 3' -60.6 NC_002794.1 + 184058 0.68 0.611713
Target:  5'- cGGGCCGCGGcgaAgCGGCACGcGCCc- -3'
miRNA:   3'- uUCCGGUGCCag-UgGCUGUGC-CGGuu -5'
11136 3' -60.6 NC_002794.1 + 71384 0.68 0.63058
Target:  5'- cAGGaccuccuCCACGGUCugCGGCucgggcCGGCCGu -3'
miRNA:   3'- uUCC-------GGUGCCAGugGCUGu-----GCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 183864 0.68 0.611713
Target:  5'- -cGGCCGuCGGggccacCGCCGACACcGCCGc -3'
miRNA:   3'- uuCCGGU-GCCa-----GUGGCUGUGcCGGUu -5'
11136 3' -60.6 NC_002794.1 + 109266 0.68 0.631574
Target:  5'- uGGuGaCCACGGUCuuggagcucuccGCCGACGCgcuGGCCAAc -3'
miRNA:   3'- uUC-C-GGUGCCAG------------UGGCUGUG---CCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 37754 0.68 0.631574
Target:  5'- cGGcGCgGCGG-CGCCGGCgggaGCGGCCGu -3'
miRNA:   3'- uUC-CGgUGCCaGUGGCUG----UGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 63451 0.68 0.585988
Target:  5'- -cGGCCGCGG-CGgCGACgaugacgacgaggcgGCGGCCGc -3'
miRNA:   3'- uuCCGGUGCCaGUgGCUG---------------UGCCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.