miRNA display CGI


Results 101 - 120 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 3' -60.6 NC_002794.1 + 128259 0.69 0.572217
Target:  5'- -uGGUCGCGGUCgggGCCGAgCGCGgaGCCGAc -3'
miRNA:   3'- uuCCGGUGCCAG---UGGCU-GUGC--CGGUU- -5'
11136 3' -60.6 NC_002794.1 + 50341 0.69 0.572217
Target:  5'- uGGGCU-CGGUCACCGGCuCcGCCAu -3'
miRNA:   3'- uUCCGGuGCCAGUGGCUGuGcCGGUu -5'
11136 3' -60.6 NC_002794.1 + 108862 0.69 0.566338
Target:  5'- -uGGCgCGCGGUCACCGgguccaacucggcguGCGCGGUg-- -3'
miRNA:   3'- uuCCG-GUGCCAGUGGC---------------UGUGCCGguu -5'
11136 3' -60.6 NC_002794.1 + 83651 0.69 0.562427
Target:  5'- -cGG-CGCGGUCACCGACcUGGUCu- -3'
miRNA:   3'- uuCCgGUGCCAGUGGCUGuGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 143267 0.69 0.562427
Target:  5'- gAAGGCC-CGG-C-CCGGCGcCGGCCGc -3'
miRNA:   3'- -UUCCGGuGCCaGuGGCUGU-GCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 30068 0.69 0.552684
Target:  5'- cGGGGUC-CGGUCGcCCGgucgacgaggcGCGCGGCCGGu -3'
miRNA:   3'- -UUCCGGuGCCAGU-GGC-----------UGUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 71082 0.69 0.552684
Target:  5'- cGGGuCCAgacgaacagcCGGUCGCCGGCGgccUGGCCGGa -3'
miRNA:   3'- uUCC-GGU----------GCCAGUGGCUGU---GCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 182193 0.7 0.476996
Target:  5'- cGGGGCCuCGG-CGCCGGCGuCGcGCCAc -3'
miRNA:   3'- -UUCCGGuGCCaGUGGCUGU-GC-CGGUu -5'
11136 3' -60.6 NC_002794.1 + 125340 0.7 0.476996
Target:  5'- --cGCCACGGcgCACCGGCAgccgcUGGCCGu -3'
miRNA:   3'- uucCGGUGCCa-GUGGCUGU-----GCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 183917 0.7 0.476996
Target:  5'- uGGGaCACGGUCcCCGGCAgGGUCAc -3'
miRNA:   3'- uUCCgGUGCCAGuGGCUGUgCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 14771 0.7 0.467885
Target:  5'- cGAGGCCGCuGagGCCGGCGaGGCCGg -3'
miRNA:   3'- -UUCCGGUGcCagUGGCUGUgCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 85962 0.7 0.467885
Target:  5'- cGGGGCCGCGGcCcucucaucggACCGcCGCGGCCc- -3'
miRNA:   3'- -UUCCGGUGCCaG----------UGGCuGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 55335 0.7 0.476996
Target:  5'- cGAGGacCCGgGGUCGcgcCCGAgGCGGCCGAg -3'
miRNA:   3'- -UUCC--GGUgCCAGU---GGCUgUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 113883 0.7 0.486194
Target:  5'- -cGGCCGCGGcgCGCguCGGCGCGGUCu- -3'
miRNA:   3'- uuCCGGUGCCa-GUG--GCUGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 57854 0.7 0.504837
Target:  5'- cGAGGUCAaGcUCACCGACGCGGCg-- -3'
miRNA:   3'- -UUCCGGUgCcAGUGGCUGUGCCGguu -5'
11136 3' -60.6 NC_002794.1 + 56911 0.7 0.504837
Target:  5'- -uGGCCACGGgCGCCGgGCugcCGGCCu- -3'
miRNA:   3'- uuCCGGUGCCaGUGGC-UGu--GCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 125449 0.7 0.504837
Target:  5'- aAGGGCgACGG-CGgCGAgCACGGCCGc -3'
miRNA:   3'- -UUCCGgUGCCaGUgGCU-GUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 55396 0.7 0.514274
Target:  5'- -cGGCCGaGGcgGCCGAgGCGGCCGAg -3'
miRNA:   3'- uuCCGGUgCCagUGGCUgUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 55369 0.7 0.514274
Target:  5'- -cGGCCGaGGcgGCCGAgGCGGCCGAg -3'
miRNA:   3'- uuCCGGUgCCagUGGCUgUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 68944 0.71 0.453496
Target:  5'- cGGGCCGCGG-CGCCGGCgccucucccuccuccGCgGGCCGc -3'
miRNA:   3'- uUCCGGUGCCaGUGGCUG---------------UG-CCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.