miRNA display CGI


Results 121 - 140 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 3' -60.6 NC_002794.1 + 121977 0.71 0.423744
Target:  5'- -cGGCU-CGGUCccGCCGAgCGCGGCCGGg -3'
miRNA:   3'- uuCCGGuGCCAG--UGGCU-GUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 121428 0.71 0.415217
Target:  5'- cGGGaCCGCGGccacCACCGAgacCACGGCCGc -3'
miRNA:   3'- uUCC-GGUGCCa---GUGGCU---GUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 75352 0.71 0.415217
Target:  5'- -cGGCgACGGUucgcCACCGACccgccGCGGCCGg -3'
miRNA:   3'- uuCCGgUGCCA----GUGGCUG-----UGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 156406 0.71 0.432374
Target:  5'- cGGcGCCGCGGcCGCgGcCACGGCCGg -3'
miRNA:   3'- uUC-CGGUGCCaGUGgCuGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 111614 0.71 0.441105
Target:  5'- cAGGCCgGCGGg-GCCGcCGCGGCCGc -3'
miRNA:   3'- uUCCGG-UGCCagUGGCuGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 38436 0.71 0.444626
Target:  5'- -uGGCgGCGGgccggacugaggaGCCGGCGCGGCCGc -3'
miRNA:   3'- uuCCGgUGCCag-----------UGGCUGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 66864 0.71 0.449936
Target:  5'- cGAGGCCGCGGcgugCgGCUGAgccauCGCGGCCGAc -3'
miRNA:   3'- -UUCCGGUGCCa---G-UGGCU-----GUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 68944 0.71 0.453496
Target:  5'- cGGGCCGCGG-CGCCGGCgccucucccuccuccGCgGGCCGc -3'
miRNA:   3'- uUCCGGUGCCaGUGGCUG---------------UG-CCGGUu -5'
11136 3' -60.6 NC_002794.1 + 116070 0.71 0.458864
Target:  5'- uGGGGUCGCGGagCGCuCGGCGCGGCgGu -3'
miRNA:   3'- -UUCCGGUGCCa-GUG-GCUGUGCCGgUu -5'
11136 3' -60.6 NC_002794.1 + 67723 0.72 0.366347
Target:  5'- aGGGGCU-CGGUC-CCGGCGgCGGCCAc -3'
miRNA:   3'- -UUCCGGuGCCAGuGGCUGU-GCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 130667 0.72 0.374212
Target:  5'- -cGGCCGCGGgcuCCGcCGCGGCCu- -3'
miRNA:   3'- uuCCGGUGCCaguGGCuGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 41243 0.72 0.374212
Target:  5'- --cGCCGCGGcCGCCGACgccgGCGGCCc- -3'
miRNA:   3'- uucCGGUGCCaGUGGCUG----UGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 99807 0.72 0.374212
Target:  5'- --cGCCGCGGgCGCCGGCGCcgucGGCCGAc -3'
miRNA:   3'- uucCGGUGCCaGUGGCUGUG----CCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 127723 0.72 0.398485
Target:  5'- uGGGGCuCGCGGacggCACCGA-ACGGCCGGa -3'
miRNA:   3'- -UUCCG-GUGCCa---GUGGCUgUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 182826 0.72 0.382191
Target:  5'- --aGCCGCGG-CACCGACACGaCCAc -3'
miRNA:   3'- uucCGGUGCCaGUGGCUGUGCcGGUu -5'
11136 3' -60.6 NC_002794.1 + 65233 0.72 0.382191
Target:  5'- cGGGCgGCGGUCGCCGcgGCGGCgAu -3'
miRNA:   3'- uUCCGgUGCCAGUGGCugUGCCGgUu -5'
11136 3' -60.6 NC_002794.1 + 184600 0.74 0.314537
Target:  5'- -cGGCCGCGGg-AUCGGCaACGGCCAGc -3'
miRNA:   3'- uuCCGGUGCCagUGGCUG-UGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 141653 0.74 0.287509
Target:  5'- -uGGCCGCGGcCGCCGGCG-GGUCGAg -3'
miRNA:   3'- uuCCGGUGCCaGUGGCUGUgCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 180911 0.74 0.294091
Target:  5'- -cGGCCGCGGUCucGCCGGCGCcGUCGGa -3'
miRNA:   3'- uuCCGGUGCCAG--UGGCUGUGcCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 108454 0.75 0.262343
Target:  5'- -cGGCgGCGGccCGCCGGCACgGGCCGAg -3'
miRNA:   3'- uuCCGgUGCCa-GUGGCUGUG-CCGGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.