miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 3' -60.6 NC_002794.1 + 76536 0.83 0.077815
Target:  5'- -cGGCCGCGG-CGCCGACGCGGUCGc -3'
miRNA:   3'- uuCCGGUGCCaGUGGCUGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 120063 0.81 0.111512
Target:  5'- -cGGCCGCGGagGCCGACGCGGCgGu -3'
miRNA:   3'- uuCCGGUGCCagUGGCUGUGCCGgUu -5'
11136 3' -60.6 NC_002794.1 + 49024 0.76 0.227989
Target:  5'- -cGGCCGCGGcgUCGuCCGGCGCGGUCGu -3'
miRNA:   3'- uuCCGGUGCC--AGU-GGCUGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 55188 0.75 0.244666
Target:  5'- cGAGGCgGCGGcccuaaCACCGGCGCGGCgGAg -3'
miRNA:   3'- -UUCCGgUGCCa-----GUGGCUGUGCCGgUU- -5'
11136 3' -60.6 NC_002794.1 + 108454 0.75 0.262343
Target:  5'- -cGGCgGCGGccCGCCGGCACgGGCCGAg -3'
miRNA:   3'- uuCCGgUGCCa-GUGGCUGUG-CCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 56309 0.75 0.244666
Target:  5'- -cGGUCGCGGUCGCUGGCGgccgUGGCCGg -3'
miRNA:   3'- uuCCGGUGCCAGUGGCUGU----GCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 184600 0.74 0.314537
Target:  5'- -cGGCCGCGGg-AUCGGCaACGGCCAGc -3'
miRNA:   3'- uuCCGGUGCCagUGGCUG-UGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 180911 0.74 0.294091
Target:  5'- -cGGCCGCGGUCucGCCGGCGCcGUCGGa -3'
miRNA:   3'- uuCCGGUGCCAG--UGGCUGUGcCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 141653 0.74 0.287509
Target:  5'- -uGGCCGCGGcCGCCGGCG-GGUCGAg -3'
miRNA:   3'- uuCCGGUGCCaGUGGCUGUgCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 130667 0.72 0.374212
Target:  5'- -cGGCCGCGGgcuCCGcCGCGGCCu- -3'
miRNA:   3'- uuCCGGUGCCaguGGCuGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 99807 0.72 0.374212
Target:  5'- --cGCCGCGGgCGCCGGCGCcgucGGCCGAc -3'
miRNA:   3'- uucCGGUGCCaGUGGCUGUG----CCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 127723 0.72 0.398485
Target:  5'- uGGGGCuCGCGGacggCACCGA-ACGGCCGGa -3'
miRNA:   3'- -UUCCG-GUGCCa---GUGGCUgUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 65233 0.72 0.382191
Target:  5'- cGGGCgGCGGUCGCCGcgGCGGCgAu -3'
miRNA:   3'- uUCCGgUGCCAGUGGCugUGCCGgUu -5'
11136 3' -60.6 NC_002794.1 + 182826 0.72 0.382191
Target:  5'- --aGCCGCGG-CACCGACACGaCCAc -3'
miRNA:   3'- uucCGGUGCCaGUGGCUGUGCcGGUu -5'
11136 3' -60.6 NC_002794.1 + 41243 0.72 0.374212
Target:  5'- --cGCCGCGGcCGCCGACgccgGCGGCCc- -3'
miRNA:   3'- uucCGGUGCCaGUGGCUG----UGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 67723 0.72 0.366347
Target:  5'- aGGGGCU-CGGUC-CCGGCGgCGGCCAc -3'
miRNA:   3'- -UUCCGGuGCCAGuGGCUGU-GCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 111614 0.71 0.441105
Target:  5'- cAGGCCgGCGGg-GCCGcCGCGGCCGc -3'
miRNA:   3'- uUCCGG-UGCCagUGGCuGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 32302 0.71 0.415217
Target:  5'- --cGCCGCGGcggccgCGCCGGcCGCGGCCGGa -3'
miRNA:   3'- uucCGGUGCCa-----GUGGCU-GUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 156406 0.71 0.432374
Target:  5'- cGGcGCCGCGGcCGCgGcCACGGCCGg -3'
miRNA:   3'- uUC-CGGUGCCaGUGgCuGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 66864 0.71 0.449936
Target:  5'- cGAGGCCGCGGcgugCgGCUGAgccauCGCGGCCGAc -3'
miRNA:   3'- -UUCCGGUGCCa---G-UGGCU-----GUGCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.