Results 21 - 40 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11136 | 3' | -60.6 | NC_002794.1 | + | 111614 | 0.71 | 0.441105 |
Target: 5'- cAGGCCgGCGGg-GCCGcCGCGGCCGc -3' miRNA: 3'- uUCCGG-UGCCagUGGCuGUGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 156406 | 0.71 | 0.432374 |
Target: 5'- cGGcGCCGCGGcCGCgGcCACGGCCGg -3' miRNA: 3'- uUC-CGGUGCCaGUGgCuGUGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 32302 | 0.71 | 0.415217 |
Target: 5'- --cGCCGCGGcggccgCGCCGGcCGCGGCCGGa -3' miRNA: 3'- uucCGGUGCCa-----GUGGCU-GUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 75352 | 0.71 | 0.415217 |
Target: 5'- -cGGCgACGGUucgcCACCGACccgccGCGGCCGg -3' miRNA: 3'- uuCCGgUGCCA----GUGGCUG-----UGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 68944 | 0.71 | 0.453496 |
Target: 5'- cGGGCCGCGG-CGCCGGCgccucucccuccuccGCgGGCCGc -3' miRNA: 3'- uUCCGGUGCCaGUGGCUG---------------UG-CCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 116070 | 0.71 | 0.458864 |
Target: 5'- uGGGGUCGCGGagCGCuCGGCGCGGCgGu -3' miRNA: 3'- -UUCCGGUGCCa-GUG-GCUGUGCCGgUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 125449 | 0.7 | 0.504837 |
Target: 5'- aAGGGCgACGG-CGgCGAgCACGGCCGc -3' miRNA: 3'- -UUCCGgUGCCaGUgGCU-GUGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 55369 | 0.7 | 0.514274 |
Target: 5'- -cGGCCGaGGcgGCCGAgGCGGCCGAg -3' miRNA: 3'- uuCCGGUgCCagUGGCUgUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 55335 | 0.7 | 0.476996 |
Target: 5'- cGAGGacCCGgGGUCGcgcCCGAgGCGGCCGAg -3' miRNA: 3'- -UUCC--GGUgCCAGU---GGCUgUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 57854 | 0.7 | 0.504837 |
Target: 5'- cGAGGUCAaGcUCACCGACGCGGCg-- -3' miRNA: 3'- -UUCCGGUgCcAGUGGCUGUGCCGguu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 182193 | 0.7 | 0.476996 |
Target: 5'- cGGGGCCuCGG-CGCCGGCGuCGcGCCAc -3' miRNA: 3'- -UUCCGGuGCCaGUGGCUGU-GC-CGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 183917 | 0.7 | 0.476996 |
Target: 5'- uGGGaCACGGUCcCCGGCAgGGUCAc -3' miRNA: 3'- uUCCgGUGCCAGuGGCUGUgCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 113883 | 0.7 | 0.486194 |
Target: 5'- -cGGCCGCGGcgCGCguCGGCGCGGUCu- -3' miRNA: 3'- uuCCGGUGCCa-GUG--GCUGUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 85962 | 0.7 | 0.467885 |
Target: 5'- cGGGGCCGCGGcCcucucaucggACCGcCGCGGCCc- -3' miRNA: 3'- -UUCCGGUGCCaG----------UGGCuGUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 14771 | 0.7 | 0.467885 |
Target: 5'- cGAGGCCGCuGagGCCGGCGaGGCCGg -3' miRNA: 3'- -UUCCGGUGcCagUGGCUGUgCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 125340 | 0.7 | 0.476996 |
Target: 5'- --cGCCACGGcgCACCGGCAgccgcUGGCCGu -3' miRNA: 3'- uucCGGUGCCa-GUGGCUGU-----GCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 55396 | 0.7 | 0.514274 |
Target: 5'- -cGGCCGaGGcgGCCGAgGCGGCCGAg -3' miRNA: 3'- uuCCGGUgCCagUGGCUgUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 56911 | 0.7 | 0.504837 |
Target: 5'- -uGGCCACGGgCGCCGgGCugcCGGCCu- -3' miRNA: 3'- uuCCGGUGCCaGUGGC-UGu--GCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 141312 | 0.69 | 0.533355 |
Target: 5'- -cGGCgACGG-CACCGGCGuCGGCUc- -3' miRNA: 3'- uuCCGgUGCCaGUGGCUGU-GCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 17486 | 0.69 | 0.572217 |
Target: 5'- --cGCCGCGuuugcgaUCGCCGACGCcGGCCGAg -3' miRNA: 3'- uucCGGUGCc------AGUGGCUGUG-CCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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