miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 3' -60.6 NC_002794.1 + 145735 0.69 0.533355
Target:  5'- gGAGGCgGCGG-CGCCGGCaucgACGGCg-- -3'
miRNA:   3'- -UUCCGgUGCCaGUGGCUG----UGCCGguu -5'
11136 3' -60.6 NC_002794.1 + 49405 0.69 0.523781
Target:  5'- -cGGCCACGGcggccgCGgCGGCGgCGGCCGu -3'
miRNA:   3'- uuCCGGUGCCa-----GUgGCUGU-GCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 6540 0.69 0.552684
Target:  5'- cGGGCCgacGCGGUgUugCGACACauGGCCAu -3'
miRNA:   3'- uUCCGG---UGCCA-GugGCUGUG--CCGGUu -5'
11136 3' -60.6 NC_002794.1 + 30068 0.69 0.552684
Target:  5'- cGGGGUC-CGGUCGcCCGgucgacgaggcGCGCGGCCGGu -3'
miRNA:   3'- -UUCCGGuGCCAGU-GGC-----------UGUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 142155 0.69 0.523781
Target:  5'- gGAGGCgGCGGUagCACCGGCAgcguCGGCa-- -3'
miRNA:   3'- -UUCCGgUGCCA--GUGGCUGU----GCCGguu -5'
11136 3' -60.6 NC_002794.1 + 143267 0.69 0.562427
Target:  5'- gAAGGCC-CGG-C-CCGGCGcCGGCCGc -3'
miRNA:   3'- -UUCCGGuGCCaGuGGCUGU-GCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 99545 0.69 0.542991
Target:  5'- cGGGCCGCGGaaACCG-CGCGcGCCc- -3'
miRNA:   3'- uUCCGGUGCCagUGGCuGUGC-CGGuu -5'
11136 3' -60.6 NC_002794.1 + 57594 0.69 0.552684
Target:  5'- cAGGCCGCgcgcguGGcCACCGAgaagGCGGCCGAc -3'
miRNA:   3'- uUCCGGUG------CCaGUGGCUg---UGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 18504 0.69 0.552684
Target:  5'- aGAGGCCGCGaacgCgACCGcgaACGCGGCCGc -3'
miRNA:   3'- -UUCCGGUGCca--G-UGGC---UGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 17486 0.69 0.572217
Target:  5'- --cGCCGCGuuugcgaUCGCCGACGCcGGCCGAg -3'
miRNA:   3'- uucCGGUGCc------AGUGGCUGUG-CCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 40511 0.69 0.562427
Target:  5'- -cGaGUCACGGcCGCCGACGC-GCCGAc -3'
miRNA:   3'- uuC-CGGUGCCaGUGGCUGUGcCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 140013 0.69 0.542991
Target:  5'- gGAGGCCGCGGagGCC---GCGGCCc- -3'
miRNA:   3'- -UUCCGGUGCCagUGGcugUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 149022 0.69 0.542991
Target:  5'- cGGGUCAUccUCACCGACuCGGCCGGa -3'
miRNA:   3'- uUCCGGUGccAGUGGCUGuGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 129515 0.69 0.572217
Target:  5'- --cGCCGCGGUCggcgcGCUGACACGGUUc- -3'
miRNA:   3'- uucCGGUGCCAG-----UGGCUGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 19509 0.69 0.572217
Target:  5'- gGAGGUCGCGccgcucggagCGCCGGCGCGGCgCGg -3'
miRNA:   3'- -UUCCGGUGCca--------GUGGCUGUGCCG-GUu -5'
11136 3' -60.6 NC_002794.1 + 179835 0.69 0.572217
Target:  5'- -cGGCCuCGGUCAgCGugGCGCGGUUAAa -3'
miRNA:   3'- uuCCGGuGCCAGUgGC--UGUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 50341 0.69 0.572217
Target:  5'- uGGGCU-CGGUCACCGGCuCcGCCAu -3'
miRNA:   3'- uUCCGGuGCCAGUGGCUGuGcCGGUu -5'
11136 3' -60.6 NC_002794.1 + 18809 0.69 0.552684
Target:  5'- -cGGCCAacgGGUCGgCGACcuCGGCCGg -3'
miRNA:   3'- uuCCGGUg--CCAGUgGCUGu-GCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 83651 0.69 0.562427
Target:  5'- -cGG-CGCGGUCACCGACcUGGUCu- -3'
miRNA:   3'- uuCCgGUGCCAGUGGCUGuGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 71082 0.69 0.552684
Target:  5'- cGGGuCCAgacgaacagcCGGUCGCCGGCGgccUGGCCGGa -3'
miRNA:   3'- uUCC-GGU----------GCCAGUGGCUGU---GCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.