Results 61 - 80 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11136 | 3' | -60.6 | NC_002794.1 | + | 50341 | 0.69 | 0.572217 |
Target: 5'- uGGGCU-CGGUCACCGGCuCcGCCAu -3' miRNA: 3'- uUCCGGuGCCAGUGGCUGuGcCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 128259 | 0.69 | 0.572217 |
Target: 5'- -uGGUCGCGGUCgggGCCGAgCGCGgaGCCGAc -3' miRNA: 3'- uuCCGGUGCCAG---UGGCU-GUGC--CGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 80023 | 0.69 | 0.551712 |
Target: 5'- gGAGGCCGgGGagaccacUCGCCGACAgugcCGGCgCGAg -3' miRNA: 3'- -UUCCGGUgCC-------AGUGGCUGU----GCCG-GUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 184058 | 0.68 | 0.611713 |
Target: 5'- cGGGCCGCGGcgaAgCGGCACGcGCCc- -3' miRNA: 3'- uUCCGGUGCCag-UgGCUGUGC-CGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 71384 | 0.68 | 0.63058 |
Target: 5'- cAGGaccuccuCCACGGUCugCGGCucgggcCGGCCGu -3' miRNA: 3'- uUCC-------GGUGCCAGugGCUGu-----GCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 41288 | 0.68 | 0.611713 |
Target: 5'- -cGGCgGCGG-CuCCGACGCgGGCCGc -3' miRNA: 3'- uuCCGgUGCCaGuGGCUGUG-CCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 95763 | 0.68 | 0.611713 |
Target: 5'- cGGGGCgGCGGcCG-CGACGgCGGCCGGg -3' miRNA: 3'- -UUCCGgUGCCaGUgGCUGU-GCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 154327 | 0.68 | 0.601801 |
Target: 5'- -cGGCguCGGUCGucCCGGgugcCGCGGCCGAg -3' miRNA: 3'- uuCCGguGCCAGU--GGCU----GUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 75475 | 0.68 | 0.601801 |
Target: 5'- ---aCCACGG-CGCCGAgACGGCCc- -3' miRNA: 3'- uuccGGUGCCaGUGGCUgUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 183864 | 0.68 | 0.611713 |
Target: 5'- -cGGCCGuCGGggccacCGCCGACACcGCCGc -3' miRNA: 3'- uuCCGGU-GCCa-----GUGGCUGUGcCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 109266 | 0.68 | 0.631574 |
Target: 5'- uGGuGaCCACGGUCuuggagcucuccGCCGACGCgcuGGCCAAc -3' miRNA: 3'- uUC-C-GGUGCCAG------------UGGCUGUG---CCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 37754 | 0.68 | 0.631574 |
Target: 5'- cGGcGCgGCGG-CGCCGGCgggaGCGGCCGu -3' miRNA: 3'- uUC-CGgUGCCaGUGGCUG----UGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 154267 | 0.68 | 0.631574 |
Target: 5'- cGGGGUC-UGGUCccgaccGCCGGCGCGGCuCGAc -3' miRNA: 3'- -UUCCGGuGCCAG------UGGCUGUGCCG-GUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 33840 | 0.68 | 0.59191 |
Target: 5'- gAAGGCCGUGGUgaccaGCCGGCACGaGCuCAAc -3' miRNA: 3'- -UUCCGGUGCCAg----UGGCUGUGC-CG-GUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 103552 | 0.68 | 0.59191 |
Target: 5'- gAAGGCCACcauGG-CGuCCGACGCcguGGCCGAc -3' miRNA: 3'- -UUCCGGUG---CCaGU-GGCUGUG---CCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 63451 | 0.68 | 0.585988 |
Target: 5'- -cGGCCGCGG-CGgCGACgaugacgacgaggcgGCGGCCGc -3' miRNA: 3'- uuCCGGUGCCaGUgGCUG---------------UGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 80431 | 0.68 | 0.581062 |
Target: 5'- cGGGGCCgccgccgGCGGcCGCCGGCccgucgGCGGCCc- -3' miRNA: 3'- -UUCCGG-------UGCCaGUGGCUG------UGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 8128 | 0.68 | 0.59191 |
Target: 5'- -cGGCCuccuCGGUgACCGGCgACGGCa-- -3' miRNA: 3'- uuCCGGu---GCCAgUGGCUG-UGCCGguu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 13811 | 0.67 | 0.661349 |
Target: 5'- cGGGCC-CGGcCGgCGGCgACGGCCu- -3' miRNA: 3'- uUCCGGuGCCaGUgGCUG-UGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 11927 | 0.67 | 0.661349 |
Target: 5'- -cGGCCACGGUgAUCGcgauCGCGGUgAGc -3' miRNA: 3'- uuCCGGUGCCAgUGGCu---GUGCCGgUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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