Results 101 - 120 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11136 | 3' | -60.6 | NC_002794.1 | + | 51344 | 0.67 | 0.680116 |
Target: 5'- -uGGaCCACGGcCAaagccgcCCGAgGCGGCCGc -3' miRNA: 3'- uuCC-GGUGCCaGU-------GGCUgUGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 41344 | 0.66 | 0.729671 |
Target: 5'- cGGGGucuCCGgGGUCACCGcCGuCGGCCu- -3' miRNA: 3'- -UUCC---GGUgCCAGUGGCuGU-GCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 181364 | 0.66 | 0.739181 |
Target: 5'- -cGGCCcgguugAgGGUCACgGGCcCGGCCGu -3' miRNA: 3'- uuCCGG------UgCCAGUGgCUGuGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 185175 | 0.66 | 0.739181 |
Target: 5'- -cGGCgcggCGCGGUCGgcgcggUCGGCGCGGUCAu -3' miRNA: 3'- uuCCG----GUGCCAGU------GGCUGUGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 17420 | 0.66 | 0.748602 |
Target: 5'- -cGGCCaucGCGGUCuccgcgccGCCGGCGCucgGGCCc- -3' miRNA: 3'- uuCCGG---UGCCAG--------UGGCUGUG---CCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 87019 | 0.66 | 0.745785 |
Target: 5'- -cGGCgAgGGUCcgcaggauccggggACCGGCGCGGCUc- -3' miRNA: 3'- uuCCGgUgCCAG--------------UGGCUGUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 113179 | 0.66 | 0.748602 |
Target: 5'- -cGGCgGCGGUCGCgGAgGCGccuccGCCGc -3' miRNA: 3'- uuCCGgUGCCAGUGgCUgUGC-----CGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 13117 | 0.66 | 0.757927 |
Target: 5'- -cGGCgG-GGUCGCCG-CGCGGCUc- -3' miRNA: 3'- uuCCGgUgCCAGUGGCuGUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 79441 | 0.66 | 0.757927 |
Target: 5'- -cGGCgGCGGcgACCGGCGCGGagaCGAc -3' miRNA: 3'- uuCCGgUGCCagUGGCUGUGCCg--GUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 31983 | 0.66 | 0.720083 |
Target: 5'- cGAGcGCCuCGGUCugCGugGgCGaGCCGAc -3' miRNA: 3'- -UUC-CGGuGCCAGugGCugU-GC-CGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 11790 | 0.66 | 0.720083 |
Target: 5'- --cGCCGCGGUguCCGugGCGccGCCGc -3' miRNA: 3'- uucCGGUGCCAguGGCugUGC--CGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 71269 | 0.66 | 0.720083 |
Target: 5'- uGAGGUCcgcGCGGUC-CCGAUACGGaaAAu -3' miRNA: 3'- -UUCCGG---UGCCAGuGGCUGUGCCggUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 194110 | 0.66 | 0.7007 |
Target: 5'- -cGuGCUGCGG-CACCGcgcGCACGGCUGAg -3' miRNA: 3'- uuC-CGGUGCCaGUGGC---UGUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 115051 | 0.66 | 0.7007 |
Target: 5'- cGGGCgGCGGgcggcagCGCCGuccagucCACGGCCu- -3' miRNA: 3'- uUCCGgUGCCa------GUGGCu------GUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 34870 | 0.66 | 0.710423 |
Target: 5'- cGGGcGCCGCGGaCGCCGcgaACGCGGaaCCAGg -3' miRNA: 3'- -UUC-CGGUGCCaGUGGC---UGUGCC--GGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 137568 | 0.66 | 0.710423 |
Target: 5'- --cGCCGCcGUCGCCGcCGgGGCCGGa -3' miRNA: 3'- uucCGGUGcCAGUGGCuGUgCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 49164 | 0.66 | 0.720083 |
Target: 5'- cGGGCCGucCGGgagGCCGAgccCACGGCCu- -3' miRNA: 3'- uUCCGGU--GCCag-UGGCU---GUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 184028 | 0.66 | 0.710423 |
Target: 5'- --cGCCACGG-CACCGcgcgcagcGCGCGGUCg- -3' miRNA: 3'- uucCGGUGCCaGUGGC--------UGUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 22577 | 0.66 | 0.720083 |
Target: 5'- -cGGCCGCuGUCcaagucgcGCuCGGCACGGUCGGg -3' miRNA: 3'- uuCCGGUGcCAG--------UG-GCUGUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 127274 | 0.66 | 0.720083 |
Target: 5'- --cGCgACGGUCACgGugACGGUgGAa -3' miRNA: 3'- uucCGgUGCCAGUGgCugUGCCGgUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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