miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 3' -60.6 NC_002794.1 + 156406 0.71 0.432374
Target:  5'- cGGcGCCGCGGcCGCgGcCACGGCCGg -3'
miRNA:   3'- uUC-CGGUGCCaGUGgCuGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 111614 0.71 0.441105
Target:  5'- cAGGCCgGCGGg-GCCGcCGCGGCCGc -3'
miRNA:   3'- uUCCGG-UGCCagUGGCuGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 38436 0.71 0.444626
Target:  5'- -uGGCgGCGGgccggacugaggaGCCGGCGCGGCCGc -3'
miRNA:   3'- uuCCGgUGCCag-----------UGGCUGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 66864 0.71 0.449936
Target:  5'- cGAGGCCGCGGcgugCgGCUGAgccauCGCGGCCGAc -3'
miRNA:   3'- -UUCCGGUGCCa---G-UGGCU-----GUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 68944 0.71 0.453496
Target:  5'- cGGGCCGCGG-CGCCGGCgccucucccuccuccGCgGGCCGc -3'
miRNA:   3'- uUCCGGUGCCaGUGGCUG---------------UG-CCGGUu -5'
11136 3' -60.6 NC_002794.1 + 116070 0.71 0.458864
Target:  5'- uGGGGUCGCGGagCGCuCGGCGCGGCgGu -3'
miRNA:   3'- -UUCCGGUGCCa-GUG-GCUGUGCCGgUu -5'
11136 3' -60.6 NC_002794.1 + 85962 0.7 0.467885
Target:  5'- cGGGGCCGCGGcCcucucaucggACCGcCGCGGCCc- -3'
miRNA:   3'- -UUCCGGUGCCaG----------UGGCuGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 14771 0.7 0.467885
Target:  5'- cGAGGCCGCuGagGCCGGCGaGGCCGg -3'
miRNA:   3'- -UUCCGGUGcCagUGGCUGUgCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 183917 0.7 0.476996
Target:  5'- uGGGaCACGGUCcCCGGCAgGGUCAc -3'
miRNA:   3'- uUCCgGUGCCAGuGGCUGUgCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 55335 0.7 0.476996
Target:  5'- cGAGGacCCGgGGUCGcgcCCGAgGCGGCCGAg -3'
miRNA:   3'- -UUCC--GGUgCCAGU---GGCUgUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 182193 0.7 0.476996
Target:  5'- cGGGGCCuCGG-CGCCGGCGuCGcGCCAc -3'
miRNA:   3'- -UUCCGGuGCCaGUGGCUGU-GC-CGGUu -5'
11136 3' -60.6 NC_002794.1 + 125340 0.7 0.476996
Target:  5'- --cGCCACGGcgCACCGGCAgccgcUGGCCGu -3'
miRNA:   3'- uucCGGUGCCa-GUGGCUGU-----GCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 113883 0.7 0.486194
Target:  5'- -cGGCCGCGGcgCGCguCGGCGCGGUCu- -3'
miRNA:   3'- uuCCGGUGCCa-GUG--GCUGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 57854 0.7 0.504837
Target:  5'- cGAGGUCAaGcUCACCGACGCGGCg-- -3'
miRNA:   3'- -UUCCGGUgCcAGUGGCUGUGCCGguu -5'
11136 3' -60.6 NC_002794.1 + 125449 0.7 0.504837
Target:  5'- aAGGGCgACGG-CGgCGAgCACGGCCGc -3'
miRNA:   3'- -UUCCGgUGCCaGUgGCU-GUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 56911 0.7 0.504837
Target:  5'- -uGGCCACGGgCGCCGgGCugcCGGCCu- -3'
miRNA:   3'- uuCCGGUGCCaGUGGC-UGu--GCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 55396 0.7 0.514274
Target:  5'- -cGGCCGaGGcgGCCGAgGCGGCCGAg -3'
miRNA:   3'- uuCCGGUgCCagUGGCUgUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 55369 0.7 0.514274
Target:  5'- -cGGCCGaGGcgGCCGAgGCGGCCGAg -3'
miRNA:   3'- uuCCGGUgCCagUGGCUgUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 142155 0.69 0.523781
Target:  5'- gGAGGCgGCGGUagCACCGGCAgcguCGGCa-- -3'
miRNA:   3'- -UUCCGgUGCCA--GUGGCUGU----GCCGguu -5'
11136 3' -60.6 NC_002794.1 + 49405 0.69 0.523781
Target:  5'- -cGGCCACGGcggccgCGgCGGCGgCGGCCGu -3'
miRNA:   3'- uuCCGGUGCCa-----GUgGCUGU-GCCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.