miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 3' -60.6 NC_002794.1 + 41344 0.66 0.729671
Target:  5'- cGGGGucuCCGgGGUCACCGcCGuCGGCCu- -3'
miRNA:   3'- -UUCC---GGUgCCAGUGGCuGU-GCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 49164 0.66 0.720083
Target:  5'- cGGGCCGucCGGgagGCCGAgccCACGGCCu- -3'
miRNA:   3'- uUCCGGU--GCCag-UGGCU---GUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 22577 0.66 0.720083
Target:  5'- -cGGCCGCuGUCcaagucgcGCuCGGCACGGUCGGg -3'
miRNA:   3'- uuCCGGUGcCAG--------UG-GCUGUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 127274 0.66 0.720083
Target:  5'- --cGCgACGGUCACgGugACGGUgGAa -3'
miRNA:   3'- uucCGgUGCCAGUGgCugUGCCGgUU- -5'
11136 3' -60.6 NC_002794.1 + 71269 0.66 0.720083
Target:  5'- uGAGGUCcgcGCGGUC-CCGAUACGGaaAAu -3'
miRNA:   3'- -UUCCGG---UGCCAGuGGCUGUGCCggUU- -5'
11136 3' -60.6 NC_002794.1 + 11790 0.66 0.720083
Target:  5'- --cGCCGCGGUguCCGugGCGccGCCGc -3'
miRNA:   3'- uucCGGUGCCAguGGCugUGC--CGGUu -5'
11136 3' -60.6 NC_002794.1 + 31983 0.66 0.720083
Target:  5'- cGAGcGCCuCGGUCugCGugGgCGaGCCGAc -3'
miRNA:   3'- -UUC-CGGuGCCAGugGCugU-GC-CGGUU- -5'
11136 3' -60.6 NC_002794.1 + 127354 0.66 0.720083
Target:  5'- --cGCuCGCGG-CGgCGGCGCGGCCGc -3'
miRNA:   3'- uucCG-GUGCCaGUgGCUGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 34870 0.66 0.710423
Target:  5'- cGGGcGCCGCGGaCGCCGcgaACGCGGaaCCAGg -3'
miRNA:   3'- -UUC-CGGUGCCaGUGGC---UGUGCC--GGUU- -5'
11136 3' -60.6 NC_002794.1 + 137568 0.66 0.710423
Target:  5'- --cGCCGCcGUCGCCGcCGgGGCCGGa -3'
miRNA:   3'- uucCGGUGcCAGUGGCuGUgCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 184028 0.66 0.710423
Target:  5'- --cGCCACGG-CACCGcgcgcagcGCGCGGUCg- -3'
miRNA:   3'- uucCGGUGCCaGUGGC--------UGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 176588 0.66 0.709453
Target:  5'- cGGGaugugacUCACGGagagCgGCCGGCACGGCCAu -3'
miRNA:   3'- uUCC-------GGUGCCa---G-UGGCUGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 189852 0.66 0.707512
Target:  5'- -cGGCCGCGGagccgucggcgucgUCgccGCCGAC-CGGCCc- -3'
miRNA:   3'- uuCCGGUGCC--------------AG---UGGCUGuGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 134206 0.66 0.7007
Target:  5'- gGGGGCCGuCGGUCGCCaa-GCGaccGCCGAu -3'
miRNA:   3'- -UUCCGGU-GCCAGUGGcugUGC---CGGUU- -5'
11136 3' -60.6 NC_002794.1 + 60119 0.66 0.7007
Target:  5'- cGAGGUCAUccucaCGCCGGuCACGGCCGAc -3'
miRNA:   3'- -UUCCGGUGcca--GUGGCU-GUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 180007 0.66 0.7007
Target:  5'- cGGGCC-CGGcCA-CGACgACGGCCGc -3'
miRNA:   3'- uUCCGGuGCCaGUgGCUG-UGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 141036 0.66 0.7007
Target:  5'- cGAGGCCccgACGGUC-CUGACGuuuuUGGCCc- -3'
miRNA:   3'- -UUCCGG---UGCCAGuGGCUGU----GCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 36908 0.66 0.7007
Target:  5'- aGAGGUCGCGG-CGCCGGCcccGCGaCCGc -3'
miRNA:   3'- -UUCCGGUGCCaGUGGCUG---UGCcGGUu -5'
11136 3' -60.6 NC_002794.1 + 12891 0.66 0.7007
Target:  5'- -cGGaCCACGaccCGCuCGACugGGCCGAg -3'
miRNA:   3'- uuCC-GGUGCca-GUG-GCUGugCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 47945 0.66 0.7007
Target:  5'- cGGcGCCGCGcGUC-CCGGCGcCGGCUGGg -3'
miRNA:   3'- uUC-CGGUGC-CAGuGGCUGU-GCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.