miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 3' -60.6 NC_002794.1 + 141036 0.66 0.7007
Target:  5'- cGAGGCCccgACGGUC-CUGACGuuuuUGGCCc- -3'
miRNA:   3'- -UUCCGG---UGCCAGuGGCUGU----GCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 36908 0.66 0.7007
Target:  5'- aGAGGUCGCGG-CGCCGGCcccGCGaCCGc -3'
miRNA:   3'- -UUCCGGUGCCaGUGGCUG---UGCcGGUu -5'
11136 3' -60.6 NC_002794.1 + 12891 0.66 0.7007
Target:  5'- -cGGaCCACGaccCGCuCGACugGGCCGAg -3'
miRNA:   3'- uuCC-GGUGCca-GUG-GCUGugCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 44709 0.66 0.7007
Target:  5'- -cGGCCGCGaccgCGgCGACGuCGGCCGg -3'
miRNA:   3'- uuCCGGUGCca--GUgGCUGU-GCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 179783 0.67 0.690924
Target:  5'- uAGcGCC-CGGUCACCGucgucagguuccACACGGUCu- -3'
miRNA:   3'- uUC-CGGuGCCAGUGGC------------UGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 14921 0.67 0.690924
Target:  5'- cGGGCuCGCGGUC-CCGACGugcucucgauCGGCUc- -3'
miRNA:   3'- uUCCG-GUGCCAGuGGCUGU----------GCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 104490 0.67 0.690924
Target:  5'- -cGGCCACGGcgGCCGGguCGGgCGAg -3'
miRNA:   3'- uuCCGGUGCCagUGGCUguGCCgGUU- -5'
11136 3' -60.6 NC_002794.1 + 133996 0.67 0.690924
Target:  5'- aGAGGU--CGGUCGCCGggugcgagcgcuGCACGGUCGGg -3'
miRNA:   3'- -UUCCGguGCCAGUGGC------------UGUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 65997 0.67 0.681101
Target:  5'- uGGGCgGugauccCGG-CACCGAgGCGGCCGc -3'
miRNA:   3'- uUCCGgU------GCCaGUGGCUgUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 94017 0.67 0.681101
Target:  5'- cGGGCCgGCGGguucCGCCGGCG-GGCCc- -3'
miRNA:   3'- uUCCGG-UGCCa---GUGGCUGUgCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 78681 0.67 0.681101
Target:  5'- -cGGCCGcCGGcCgcaugugcgGCCGACACGGCg-- -3'
miRNA:   3'- uuCCGGU-GCCaG---------UGGCUGUGCCGguu -5'
11136 3' -60.6 NC_002794.1 + 145468 0.67 0.681101
Target:  5'- -uGGa-GCGGUCGCCGAa--GGCCGAg -3'
miRNA:   3'- uuCCggUGCCAGUGGCUgugCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 376 0.67 0.681101
Target:  5'- -cGGCCGCGcGaUCcCCGGCACGcuGCCAc -3'
miRNA:   3'- uuCCGGUGC-C-AGuGGCUGUGC--CGGUu -5'
11136 3' -60.6 NC_002794.1 + 151605 0.67 0.681101
Target:  5'- cGGGcCCGCGGUUcCuCGGCugACGGCCGg -3'
miRNA:   3'- uUCC-GGUGCCAGuG-GCUG--UGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 189665 0.67 0.681101
Target:  5'- -uGGCCgaGCGGUCGCCc---CGGCCGGg -3'
miRNA:   3'- uuCCGG--UGCCAGUGGcuguGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 51344 0.67 0.680116
Target:  5'- -uGGaCCACGGcCAaagccgcCCGAgGCGGCCGc -3'
miRNA:   3'- uuCC-GGUGCCaGU-------GGCUgUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 82575 0.67 0.675188
Target:  5'- cGAGGCCgACGc-CGCCGAgacggagacccucucCGCGGCCGAa -3'
miRNA:   3'- -UUCCGG-UGCcaGUGGCU---------------GUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 111656 0.67 0.67124
Target:  5'- -cGGCCGCGGccaCGCCcgucgGAUACGGUCGu -3'
miRNA:   3'- uuCCGGUGCCa--GUGG-----CUGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 149881 0.67 0.67124
Target:  5'- gGGGGUCugGGUCAUCGugAcccgggauCGGCUg- -3'
miRNA:   3'- -UUCCGGugCCAGUGGCugU--------GCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 188067 0.67 0.67124
Target:  5'- -cGGCCAgcGUCACCGuCGguuCGGCCAAg -3'
miRNA:   3'- uuCCGGUgcCAGUGGCuGU---GCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.