miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 3' -60.6 NC_002794.1 + 20987 0.67 0.641508
Target:  5'- -cGGCgGCGG-CAgCGACcgcgGCGGCCAc -3'
miRNA:   3'- uuCCGgUGCCaGUgGCUG----UGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 22577 0.66 0.720083
Target:  5'- -cGGCCGCuGUCcaagucgcGCuCGGCACGGUCGGg -3'
miRNA:   3'- uuCCGGUGcCAG--------UG-GCUGUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 30068 0.69 0.552684
Target:  5'- cGGGGUC-CGGUCGcCCGgucgacgaggcGCGCGGCCGGu -3'
miRNA:   3'- -UUCCGGuGCCAGU-GGC-----------UGUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 31983 0.66 0.720083
Target:  5'- cGAGcGCCuCGGUCugCGugGgCGaGCCGAc -3'
miRNA:   3'- -UUC-CGGuGCCAGugGCugU-GC-CGGUU- -5'
11136 3' -60.6 NC_002794.1 + 32302 0.71 0.415217
Target:  5'- --cGCCGCGGcggccgCGCCGGcCGCGGCCGGa -3'
miRNA:   3'- uucCGGUGCCa-----GUGGCU-GUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 33840 0.68 0.59191
Target:  5'- gAAGGCCGUGGUgaccaGCCGGCACGaGCuCAAc -3'
miRNA:   3'- -UUCCGGUGCCAg----UGGCUGUGC-CG-GUU- -5'
11136 3' -60.6 NC_002794.1 + 34870 0.66 0.710423
Target:  5'- cGGGcGCCGCGGaCGCCGcgaACGCGGaaCCAGg -3'
miRNA:   3'- -UUC-CGGUGCCaGUGGC---UGUGCC--GGUU- -5'
11136 3' -60.6 NC_002794.1 + 35654 0.67 0.651436
Target:  5'- cGGGcGCC-CGGUCuCCGACGUGGUCAAc -3'
miRNA:   3'- -UUC-CGGuGCCAGuGGCUGUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 36908 0.66 0.7007
Target:  5'- aGAGGUCGCGG-CGCCGGCcccGCGaCCGc -3'
miRNA:   3'- -UUCCGGUGCCaGUGGCUG---UGCcGGUu -5'
11136 3' -60.6 NC_002794.1 + 37754 0.68 0.631574
Target:  5'- cGGcGCgGCGG-CGCCGGCgggaGCGGCCGu -3'
miRNA:   3'- uUC-CGgUGCCaGUGGCUG----UGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 38436 0.71 0.444626
Target:  5'- -uGGCgGCGGgccggacugaggaGCCGGCGCGGCCGc -3'
miRNA:   3'- uuCCGgUGCCag-----------UGGCUGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 40511 0.69 0.562427
Target:  5'- -cGaGUCACGGcCGCCGACGC-GCCGAc -3'
miRNA:   3'- uuC-CGGUGCCaGUGGCUGUGcCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 41243 0.72 0.374212
Target:  5'- --cGCCGCGGcCGCCGACgccgGCGGCCc- -3'
miRNA:   3'- uucCGGUGCCaGUGGCUG----UGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 41288 0.68 0.611713
Target:  5'- -cGGCgGCGG-CuCCGACGCgGGCCGc -3'
miRNA:   3'- uuCCGgUGCCaGuGGCUGUG-CCGGUu -5'
11136 3' -60.6 NC_002794.1 + 41344 0.66 0.729671
Target:  5'- cGGGGucuCCGgGGUCACCGcCGuCGGCCu- -3'
miRNA:   3'- -UUCC---GGUgCCAGUGGCuGU-GCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 44709 0.66 0.7007
Target:  5'- -cGGCCGCGaccgCGgCGACGuCGGCCGg -3'
miRNA:   3'- uuCCGGUGCca--GUgGCUGU-GCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 47945 0.66 0.7007
Target:  5'- cGGcGCCGCGcGUC-CCGGCGcCGGCUGGg -3'
miRNA:   3'- uUC-CGGUGC-CAGuGGCUGU-GCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 49024 0.76 0.227989
Target:  5'- -cGGCCGCGGcgUCGuCCGGCGCGGUCGu -3'
miRNA:   3'- uuCCGGUGCC--AGU-GGCUGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 49164 0.66 0.720083
Target:  5'- cGGGCCGucCGGgagGCCGAgccCACGGCCu- -3'
miRNA:   3'- uUCCGGU--GCCag-UGGCU---GUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 49405 0.69 0.523781
Target:  5'- -cGGCCACGGcggccgCGgCGGCGgCGGCCGu -3'
miRNA:   3'- uuCCGGUGCCa-----GUgGCUGU-GCCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.