Results 41 - 60 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11136 | 3' | -60.6 | NC_002794.1 | + | 49433 | 0.66 | 0.757927 |
Target: 5'- --nGUCACGG-CGuCCGGCGCGGUCGu -3' miRNA: 3'- uucCGGUGCCaGU-GGCUGUGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 50341 | 0.69 | 0.572217 |
Target: 5'- uGGGCU-CGGUCACCGGCuCcGCCAu -3' miRNA: 3'- uUCCGGuGCCAGUGGCUGuGcCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 51344 | 0.67 | 0.680116 |
Target: 5'- -uGGaCCACGGcCAaagccgcCCGAgGCGGCCGc -3' miRNA: 3'- uuCC-GGUGCCaGU-------GGCUgUGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 55188 | 0.75 | 0.244666 |
Target: 5'- cGAGGCgGCGGcccuaaCACCGGCGCGGCgGAg -3' miRNA: 3'- -UUCCGgUGCCa-----GUGGCUGUGCCGgUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 55335 | 0.7 | 0.476996 |
Target: 5'- cGAGGacCCGgGGUCGcgcCCGAgGCGGCCGAg -3' miRNA: 3'- -UUCC--GGUgCCAGU---GGCUgUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 55369 | 0.7 | 0.514274 |
Target: 5'- -cGGCCGaGGcgGCCGAgGCGGCCGAg -3' miRNA: 3'- uuCCGGUgCCagUGGCUgUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 55396 | 0.7 | 0.514274 |
Target: 5'- -cGGCCGaGGcgGCCGAgGCGGCCGAg -3' miRNA: 3'- uuCCGGUgCCagUGGCUgUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 56309 | 0.75 | 0.244666 |
Target: 5'- -cGGUCGCGGUCGCUGGCGgccgUGGCCGg -3' miRNA: 3'- uuCCGGUGCCAGUGGCUGU----GCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 56911 | 0.7 | 0.504837 |
Target: 5'- -uGGCCACGGgCGCCGgGCugcCGGCCu- -3' miRNA: 3'- uuCCGGUGCCaGUGGC-UGu--GCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 57594 | 0.69 | 0.552684 |
Target: 5'- cAGGCCGCgcgcguGGcCACCGAgaagGCGGCCGAc -3' miRNA: 3'- uUCCGGUG------CCaGUGGCUg---UGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 57854 | 0.7 | 0.504837 |
Target: 5'- cGAGGUCAaGcUCACCGACGCGGCg-- -3' miRNA: 3'- -UUCCGGUgCcAGUGGCUGUGCCGguu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 60119 | 0.66 | 0.7007 |
Target: 5'- cGAGGUCAUccucaCGCCGGuCACGGCCGAc -3' miRNA: 3'- -UUCCGGUGcca--GUGGCU-GUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 62581 | 0.66 | 0.739181 |
Target: 5'- cAGcGCCGCcGcCGCCGACGCcagGGCCAc -3' miRNA: 3'- uUC-CGGUGcCaGUGGCUGUG---CCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 63451 | 0.68 | 0.585988 |
Target: 5'- -cGGCCGCGG-CGgCGACgaugacgacgaggcgGCGGCCGc -3' miRNA: 3'- uuCCGGUGCCaGUgGCUG---------------UGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 65233 | 0.72 | 0.382191 |
Target: 5'- cGGGCgGCGGUCGCCGcgGCGGCgAu -3' miRNA: 3'- uUCCGgUGCCAGUGGCugUGCCGgUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 65997 | 0.67 | 0.681101 |
Target: 5'- uGGGCgGugauccCGG-CACCGAgGCGGCCGc -3' miRNA: 3'- uUCCGgU------GCCaGUGGCUgUGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 66864 | 0.71 | 0.449936 |
Target: 5'- cGAGGCCGCGGcgugCgGCUGAgccauCGCGGCCGAc -3' miRNA: 3'- -UUCCGGUGCCa---G-UGGCU-----GUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 67723 | 0.72 | 0.366347 |
Target: 5'- aGGGGCU-CGGUC-CCGGCGgCGGCCAc -3' miRNA: 3'- -UUCCGGuGCCAGuGGCUGU-GCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 68944 | 0.71 | 0.453496 |
Target: 5'- cGGGCCGCGG-CGCCGGCgccucucccuccuccGCgGGCCGc -3' miRNA: 3'- uUCCGGUGCCaGUGGCUG---------------UG-CCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 71082 | 0.69 | 0.552684 |
Target: 5'- cGGGuCCAgacgaacagcCGGUCGCCGGCGgccUGGCCGGa -3' miRNA: 3'- uUCC-GGU----------GCCAGUGGCUGU---GCCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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